View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15085_low_1 (Length: 528)
Name: NF15085_low_1
Description: NF15085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15085_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 10 - 473
Target Start/End: Complemental strand, 42701953 - 42701496
Alignment:
| Q |
10 |
attattctcatcgttgctgtagttgttcttatatgggtttatgtcattgcttgcagtgcttttaagaatgctcaaacagaagacctcttcacccgttaca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42701953 |
attattctcatcgttgctgtagttgttcttatatgggtttatgtcattgcttgcagtgcttttaagaatgctcaaacagaagacctcttcacccgttaca |
42701854 |
T |
|
| Q |
110 |
aacagggttgggtatgaattttatcatctttcctcacaatctacgtagcactgagaatttaggtaaaagacatgttcgacactctacgctgcctgatata |
209 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42701853 |
aacagggttgggtatgaattttatcatctttcctcacaatctacgtagcactgagaatttaggtaaaagacatgttcgacactctacgctgcctgatata |
42701754 |
T |
|
| Q |
210 |
catacaacacaaacacttgctggttataacctatcacttttttccttttaaaatcactactaatgtttatgtgacaatatcagtgttgtgtgctgctgct |
309 |
Q |
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|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42701753 |
cacacgacacaaacacttgctggttataacctatcacttttttccttttaaaatcactactaatgtttatgtgccaatatcagtgttgtgtgctgctgct |
42701654 |
T |
|
| Q |
310 |
atgtctcacagctcacgagtcacaagtttcaaattttttaacgttagtctttctgtcttttgcttctcaatattttttccacgctcatgttgacnnnnnn |
409 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42701653 |
atgtctcacagctcacgagtcacaagtttcaaattttttaacgttagtctttctgtcttttggttctcaatattttttccacgctcatgttgac--aaaa |
42701556 |
T |
|
| Q |
410 |
nnnnnnnnctaatacgtacttgaatgttgctctataggaaaatagatgattgcattttggaaaa |
473 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42701555 |
aaataaaactaa----tacttgaatgttgctctatgggaaaatagatgattgcattttggaaaa |
42701496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 470 - 498
Target Start/End: Complemental strand, 14548108 - 14548080
Alignment:
| Q |
470 |
aaaagagtaatgatacatagacacccttt |
498 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
14548108 |
aaaagagtaatgatacatagacacccttt |
14548080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 470 - 498
Target Start/End: Original strand, 34012210 - 34012238
Alignment:
| Q |
470 |
aaaagagtaatgatacatagacacccttt |
498 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
34012210 |
aaaagagtaatgatacatagacacccttt |
34012238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 470 - 498
Target Start/End: Complemental strand, 32869864 - 32869836
Alignment:
| Q |
470 |
aaaagagtaatgatacatagacacccttt |
498 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
32869864 |
aaaagagtaatgatacatagacacccttt |
32869836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 470 - 498
Target Start/End: Original strand, 16115246 - 16115274
Alignment:
| Q |
470 |
aaaagagtaatgatacatagacacccttt |
498 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
16115246 |
aaaagagtaatgatacatagacacccttt |
16115274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 470 - 498
Target Start/End: Original strand, 33149552 - 33149580
Alignment:
| Q |
470 |
aaaagagtaatgatacatagacacccttt |
498 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
33149552 |
aaaagagtaatgatacatagacacccttt |
33149580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 470 - 498
Target Start/End: Complemental strand, 33644386 - 33644358
Alignment:
| Q |
470 |
aaaagagtaatgatacatagacacccttt |
498 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
33644386 |
aaaagagtaatgatacatagacacccttt |
33644358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 470 - 498
Target Start/End: Original strand, 48587015 - 48587043
Alignment:
| Q |
470 |
aaaagagtaatgatacatagacacccttt |
498 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
48587015 |
aaaagagtaatgatacatagacacccttt |
48587043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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