View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15086_high_4 (Length: 288)
Name: NF15086_high_4
Description: NF15086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15086_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 31457495 - 31457776
Alignment:
| Q |
1 |
ttatatttatttcgctacaagtgttctaaaacacatgttaactttttcattttactttttaatctttcattattgatgaatctaaaacataaatctcatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31457495 |
ttatatttatttcgctacaagtgttctaaaacacatgttaacttttttgttttactttttaatctttcattattgatgaatctaaaacataaatctcatt |
31457594 |
T |
|
| Q |
101 |
aattaattttactatgcaaaggtaagagagtcagagatcaacggaagaagagnnnnnnntattgtccacattaaaaaatgcaggtatgtttagttttctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31457595 |
aattaattttactatgcaaaggtaagagagtcagagatcaacggaagaagagaaaaaaatattgtccacattaaaaaatgcaggtatgtttagttttctc |
31457694 |
T |
|
| Q |
201 |
taattaaaattttcttcaatagaaaattgtctgcattattcaagtagtattccgtaaaaattagttctctaaagtataattt |
282 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
31457695 |
taaataaaattttcttcaatagaaaattgtctgcattattcaagtagtattccgtaaaaatgagttctctaatgtataattt |
31457776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 162 - 282
Target Start/End: Original strand, 31467494 - 31467619
Alignment:
| Q |
162 |
ttgtccacattaaaaaatgcaggtatgtttagttttctctaattaaaattttcttc-----aatagaaaattgtctgcattattcaagtagtattccgta |
256 |
Q |
| |
|
|||||||||| ||| ||||||||| ||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
31467494 |
ttgtccacataaaattatgcaggtaggtttagttttctctaattaaaatttccttcaatagaatagaaaattgtttgcattattcaagtagtattcccta |
31467593 |
T |
|
| Q |
257 |
aaaattagttctctaaagtataattt |
282 |
Q |
| |
|
|||| |||||||||| || |||||| |
|
|
| T |
31467594 |
aaaacaagttctctaatgtgtaattt |
31467619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University