View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15087_high_1 (Length: 661)

Name: NF15087_high_1
Description: NF15087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15087_high_1
NF15087_high_1
[»] chr3 (3 HSPs)
chr3 (13-643)||(35497409-35498023)
chr3 (217-362)||(29246654-29246811)
chr3 (130-190)||(29246877-29246937)
[»] chr7 (2 HSPs)
chr7 (130-362)||(11210997-11211232)
chr7 (257-355)||(46254001-46254099)
[»] chr6 (1 HSPs)
chr6 (323-363)||(2780809-2780849)
[»] chr1 (2 HSPs)
chr1 (130-190)||(36658352-36658412)
chr1 (323-355)||(36658212-36658244)
[»] chr5 (2 HSPs)
chr5 (130-190)||(32520092-32520152)
chr5 (310-351)||(32521615-32521656)
[»] chr2 (2 HSPs)
chr2 (257-295)||(29717312-29717350)
chr2 (130-187)||(35976011-35976068)
[»] chr4 (1 HSPs)
chr4 (64-105)||(19444434-19444475)


Alignment Details
Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 13 - 643
Target Start/End: Complemental strand, 35498023 - 35497409
Alignment:
Q  13 aatattcacaatgatgagcaggataaacacatgcatttatgattctgagtttgggcacggataattacccatatatttgaatggatatgagtgtcggtac 112  Q
    ||||||||| |||||| ||||||||||||||||||||||||| |  |||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  35498023 aatattcacgatgatgggcaggataaacacatgcatttatgagttcgagtttgggctcggataattacccatatatttgaatgggtatgagtgtcggtac 35497924  T
Q  113 agccaatcttatatgattttaaatttatataccattaaagttgattaaatataaacttctttactattatttaaacctgaacaatcattattgctacttc 212  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35497923 ggccaatcttatatgattttaaatttatataccattaaagttgattaaatataaacttctttactattatttaaacctgaacaatcataattgctacttc 35497824  T
Q  213 cttttcataagttaccgatggacatctcttcttctttgcatccatttttgttgttgtcgtgtttttatcgttagtcaactatgaatacatattgttctaa 312  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35497823 cttttcataagttaccgatcgacatctcttcttctttgcatctatttttattgttgtcgtgtttttatcgttagtcaactatgaatatatattgttctaa 35497724  T
Q  313 atacaaactattgaatcatctctaaattatttgttaattgttatat--ttttgttgtcac--tggtactaaagtacatggaataggcacaggtatgtcac 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  35497723 atacaaactattgaatcatctctaaattatttgttaattgttatatttttttgttgtcactttggtactaaagtacatggaataggcacaggtatgtcac 35497624  T
Q  409 ttaaatgcacacagggtatggagacagagtaaaattgctgcctacaaagtatgaactcggatacaaacatgtttgttttacagatacagatatcgggacg 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35497623 ttaaatgcacacagggtatggagacagagtaaaattgctgcctacaaagtatgaactcggatacaaacatgtttgttttacagatgcagatatcgggacg 35497524  T
Q  509 agtattatagtatctatccattggggacattgccatccctcacgtgatgtgcagcacctaaaatcatgatttacttatccatacaactaaaagcctacaa 608  Q
    |||||||||||||                    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35497523 agtattatagtat--------------------catccctcacgtgatgtgcagctcctaaaatcatgatttacttatccatacaactaaaagcctacaa 35497444  T
Q  609 tctaggtgaagagataaagaggctagtgcgagtgg 643  Q
    |||| ||||||||||||||||||||||||||||||    
T  35497443 tctatgtgaagagataaagaggctagtgcgagtgg 35497409  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 29246811 - 29246654
Alignment:
Q  217 tcataagttaccgatggacatctcttcttcttt---gcatccatttt-tgttgttgtcgtgtttttatcgttagtcaactatg-------aatacatatt 305  Q
    ||||||| ||| ||| |||||||||| ||||||   ||||||||||| |||||||||| ||||||||||||||||||||||||        ||||||||     
T  29246811 tcataagctactgatcgacatctcttgttcttttgtgcatccattttctgttgttgtcttgtttttatcgttagtcaactatggatacatcatacatatg 29246712  T
Q  306 gtt-ctaaatacaaactattgaatcatctctaaattatttgttaattgttatattttt 362  Q
    ||| | |||||| || | ||||||||||||||||||||||||||  ||||| ||||||    
T  29246711 gttccaaaatacgaattgttgaatcatctctaaattatttgttatatgttacattttt 29246654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 29246937 - 29246877
Alignment:
Q  130 tttaaatttatataccattaaagttgattaaatataaacttctttactattatttaaacct 190  Q
    ||||||| |||||| |||||||||| |||||   ||||||| ||||| |||||||||||||    
T  29246937 tttaaatgtatatatcattaaagttaattaatcgtaaacttttttacaattatttaaacct 29246877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 130 - 362
Target Start/End: Original strand, 11210997 - 11211232
Alignment:
Q  130 tttaaatttatataccattaaagttgattaaatataaacttctttactattatttaaa------cctgaacaatcattattgctacttccttttcataag 223  Q
    ||||||||||||||||||||||| ||||||| | ||||| | |||| |||||||||||      ||| ||||||| || ||| | |||| || || || |    
T  11210997 tttaaatttatataccattaaagatgattaattgtaaacatttttattattatttaaatctaaacctaaacaatcgttgttgttgcttctttctcttatg 11211096  T
Q  224 -ttaccgatggacatctcttcttctttgcatccatttttgttgttgtcgtgtttttatcgttagtcaactatgaatacatattgttctaaatacaaacta 322  Q
     |||||||| ||||||||||||| | ||||||||||||   ||||||  | |||||||||||||||||||||| |||  | | |||  ||||| ||| |     
T  11211097 cttaccgatcgacatctcttcttttgtgcatccattttc--tgttgttttatttttatcgttagtcaactatggata--tgtggtttcaaatagaaattg 11211192  T
Q  323 ttgaatcatctctaaattatttgttaattgttatattttt 362  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  11211193 ttgaatcatctctaaattatttgttaattgttacattttt 11211232  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 257 - 355
Target Start/End: Original strand, 46254001 - 46254099
Alignment:
Q  257 tttttgttgttgtcgtgtttttatcgttagtcaactatgaatacatattgttctaaatacaaactattgaatcatctctaaattatttgttaattgtta 355  Q
    |||||||| ||||| | |||||||| ||||||||||||| | |||||| |||  ||||||||| | |||||||||||||||||||||||||||||||||    
T  46254001 tttttgttcttgtcttatttttatcattagtcaactatggagacatatggtttcaaatacaaattgttgaatcatctctaaattatttgttaattgtta 46254099  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 2780849 - 2780809
Alignment:
Q  323 ttgaatcatctctaaattatttgttaattgttatatttttg 363  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2780849 ttgaatcatctctaaattatttgttaattgttatatttttg 2780809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 36658412 - 36658352
Alignment:
Q  130 tttaaatttatataccattaaagttgattaaatataaacttctttactattatttaaacct 190  Q
    |||| ||||||||| |||||||||||||||| | ||||| | |||||||||||||||||||    
T  36658412 tttatatttatatatcattaaagttgattaagtgtaaacatttttactattatttaaacct 36658352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 355
Target Start/End: Complemental strand, 36658244 - 36658212
Alignment:
Q  323 ttgaatcatctctaaattatttgttaattgtta 355  Q
    ||||||||||| |||||||||||||||||||||    
T  36658244 ttgaatcatctttaaattatttgttaattgtta 36658212  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 32520092 - 32520152
Alignment:
Q  130 tttaaatttatataccattaaagttgattaaatataaacttctttactattatttaaacct 190  Q
    ||||||| || |||||||||||||||||||| | ||||||| ||||  |||||||||||||    
T  32520092 tttaaatctacataccattaaagttgattaattgtaaacttttttataattatttaaacct 32520152  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 32521615 - 32521656
Alignment:
Q  310 taaatacaaactattgaatcatctctaaattatttgttaatt 351  Q
    |||||| ||| | |||||||||||||||||||||||||||||    
T  32521615 taaataaaaattgttgaatcatctctaaattatttgttaatt 32521656  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 257 - 295
Target Start/End: Original strand, 29717312 - 29717350
Alignment:
Q  257 tttttgttgttgtcgtgtttttatcgttagtcaactatg 295  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  29717312 tttttcttgttgtcttgtttttatcgttagtcaactatg 29717350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 35976011 - 35976068
Alignment:
Q  130 tttaaatttatataccattaaagttgattaaatataaacttctttactattatttaaa 187  Q
    ||||||||||||||||||||||||  ||||| | ||||||| ||||| | ||||||||    
T  35976011 tttaaatttatataccattaaagtcaattaattgtaaacttttttacaaatatttaaa 35976068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 19444434 - 19444475
Alignment:
Q  64 tgggcacggataattacccatatatttgaatggatatgagtg 105  Q
    |||||||||||||||||||| | |||||||||| ||||||||    
T  19444434 tgggcacggataattacccacaaatttgaatgggtatgagtg 19444475  T

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