View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15087_high_6 (Length: 401)

Name: NF15087_high_6
Description: NF15087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15087_high_6
NF15087_high_6
[»] chr4 (6 HSPs)
chr4 (39-288)||(4908321-4908570)
chr4 (73-204)||(4902559-4902688)
chr4 (112-203)||(4916347-4916434)
chr4 (92-173)||(4896572-4896647)
chr4 (39-142)||(4938075-4938179)
chr4 (39-108)||(4984800-4984869)
[»] chr6 (3 HSPs)
chr6 (44-174)||(22009481-22009611)
chr6 (61-203)||(22055396-22055544)
chr6 (61-203)||(22020899-22021050)
[»] chr2 (3 HSPs)
chr2 (44-174)||(44309763-44309893)
chr2 (61-203)||(44365781-44365929)
chr2 (61-203)||(44331007-44331158)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 39 - 288
Target Start/End: Complemental strand, 4908570 - 4908321
Alignment:
Q  39 acaacaaattattcactatgagaagcactcattgtttggaagaacaattctcaaagggaatttagtgaacaagttgttgttgaggttcaaagtgagtaca 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4908570 acaacaaattattcactatgagaagcactcattgtttggaagaacaattctcaaagggaatttagtgaacaagttgttattgaggttcaaagtgagtaca 4908471  T
Q  139 agagaagagaagtggtaagtttcagcattatataaagcaatcattattgagaacaaatagttttttgaaatatttttcgtgtacaattttatttggataa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4908470 agagaagagaagtggtaagtttcagcattatataaagcaatcattattgagaacaaatagttttttgaaatatttttcgtgtacaattttatttggagaa 4908371  T
Q  239 tctttcgtgtagtagtggtaaggatttagttgtgtacaatattcgttgga 288  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4908370 tctttcgtgtagtagtggtaagaatttagttgtgtacaatattcgttgga 4908321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 4902688 - 4902559
Alignment:
Q  73 tttggaagaacaattctcaaagggaatttagtgaacaagttgttgttg---aggttcaaagtgagtacaagagaagagaagtggtaagtttcagcattat 169  Q
    ||||||||| ||||| || ||||||||||| |||||||||||||||||   |||||||||||||||||||||| ||     |||||||||||| ||||||    
T  4902688 tttggaagagcaattttcgaagggaatttattgaacaagttgttgttgttgaggttcaaagtgagtacaagagtag-----tggtaagtttcaacattat 4902594  T
Q  170 ataaagcaatcattattgagaacaaatagtttttt 204  Q
    |||||| | ||||||||||||||||||||||||||    
T  4902593 ataaagaagtcattattgagaacaaatagtttttt 4902559  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 112 - 203
Target Start/End: Complemental strand, 4916434 - 4916347
Alignment:
Q  112 ttgttgttgaggttcaaagtgagtacaagagaagagaagtggtaagtttcagc-attatataaagcaatcattattgagaacaaatagttttt 203  Q
    |||||||||||||||||||||||| |||||| || ||     ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4916434 ttgttgttgaggttcaaagtgagtgcaagagtagtga-----taagtttcagccattatataaagcaatcattattgagaacaaatagttttt 4916347  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 92 - 173
Target Start/End: Complemental strand, 4896647 - 4896572
Alignment:
Q  92 aagggaatttagtgaacaagttgttgttgaggttcaaagtgagtacaagagaagagaagtggtaagtttcagcattatataa 173  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||     |||||||||||||||||||||||    
T  4896647 aagggaatttagtgaacaa-ttgttgttaaggttcaaagtgagtacaagagtag-----tggtaagtttcagcattatataa 4896572  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 142
Target Start/End: Complemental strand, 4938179 - 4938075
Alignment:
Q  39 acaacaaattattcactatgagaagcactcattgtttggaagaacaattctcaaagggaattta--gtgaacaagttgttgttgaggttcaaagtgagta 136  Q
    |||||||||||||   | |||||||||||||||||| | ||||||||||||| |||| ||||||  | ||| |  ||||||||||||||||||||||| |    
T  4938179 acaacaaattattatttgtgagaagcactcattgttag-aagaacaattctcgaaggaaatttatagcgaagagtttgttgttgaggttcaaagtgagga 4938081  T
Q  137 caagag 142  Q
    ||||||    
T  4938080 caagag 4938075  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 4984869 - 4984800
Alignment:
Q  39 acaacaaattattcactatgagaagcactcattgtttggaagaacaattctcaaagggaatttagtgaac 108  Q
    |||||||| |||||  | ||| || |||| |||||||||||||||| |||| ||||||| ||||||||||    
T  4984869 acaacaaaatattctttgtgataaacacttattgtttggaagaacatttcttaaagggagtttagtgaac 4984800  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 174
Target Start/End: Complemental strand, 22009611 - 22009481
Alignment:
Q  44 aaattattcactatgagaagcactcattgtttggaagaacaattctcaaagggaatttagtgaacaagttgttgttgaggttcaaagtgagtacaagaga 143  Q
    |||||||||  |||||||||||||| ||||| ||||||||||  |||||||||||||||||||| |  ||||||||||| |||||  ||||||||||||     
T  22009611 aaattattctttatgagaagcactcgttgtt-ggaagaacaacactcaaagggaatttagtgaagagtttgttgttgagattcaatatgagtacaagagg 22009513  T
Q  144 agagaagtggtaagtttcag-cattatataaa 174  Q
     ||| ||||||||||||||| |||||||||||    
T  22009512 tgaggagtggtaagtttcagccattatataaa 22009481  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 61 - 203
Target Start/End: Complemental strand, 22055544 - 22055396
Alignment:
Q  61 aagcactcattgtttggaagaacaattctcaaagggaatttagtgaacaagttgttgttgaggttcaaagtgagtacaagagaagagaagtggtaagttt 160  Q
    |||||||| ||||| ||||||||||  |  ||||||| ||||||||| |  ||||||||||| ||||| |||||||||||||  ||| ||||||||||||    
T  22055544 aagcactcgttgtt-ggaagaacaacacaaaaagggagtttagtgaagagtttgttgttgagattcaatgtgagtacaagaggtgaggagtggtaagttt 22055446  T
Q  161 cag-cattatataaagca------atcattattgagaacaaatagttttt 203  Q
    ||| ||||||||||||||      |||| |||||||||||||||||||||    
T  22055445 cagccattatataaagcaatcaatatcaatattgagaacaaatagttttt 22055396  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 61 - 203
Target Start/End: Complemental strand, 22021050 - 22020899
Alignment:
Q  61 aagcactcattgtttggaagaacaattctcaaagggaatttagtgaacaag---ttgttgttgaggttcaaagtgagtacaagagaagagaagtggtaag 157  Q
    |||||||| ||||| ||||||||||  |  ||||||| ||||||||| |||   ||||||||||| ||||| |||||||||||||  ||| |||||||||    
T  22021050 aagcactcgttgtt-ggaagaacaacacaaaaagggagtttagtgaagaagagtttgttgttgagattcaatgtgagtacaagaggtgaggagtggtaag 22020952  T
Q  158 tttcag-cattatataaagca------atcattattgagaacaaatagttttt 203  Q
    |||| | ||||||||||||||      |||| |||||||||||||||||||||    
T  22020951 tttctgccattatataaagcaatcaatatcaatattgagaacaaatagttttt 22020899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 174
Target Start/End: Complemental strand, 44309893 - 44309763
Alignment:
Q  44 aaattattcactatgagaagcactcattgtttggaagaacaattctcaaagggaatttagtgaacaagttgttgttgaggttcaaagtgagtacaagaga 143  Q
    |||||||||  |||||||||||||| ||||| ||||||||||  |||||||||||||||||||| |  ||||||||||| |||||  ||||||||||||     
T  44309893 aaattattctttatgagaagcactcgttgtt-ggaagaacaacactcaaagggaatttagtgaagagtttgttgttgagattcaatatgagtacaagagg 44309795  T
Q  144 agagaagtggtaagtttcag-cattatataaa 174  Q
     ||| ||||||||||||||| |||||||||||    
T  44309794 tgaggagtggtaagtttcagccattatataaa 44309763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 61 - 203
Target Start/End: Complemental strand, 44365929 - 44365781
Alignment:
Q  61 aagcactcattgtttggaagaacaattctcaaagggaatttagtgaacaagttgttgttgaggttcaaagtgagtacaagagaagagaagtggtaagttt 160  Q
    |||||||| ||||| ||||||||||  |  ||||||| ||||||||| |  ||||||||||| ||||| |||||||||||||  ||| ||||||||||||    
T  44365929 aagcactcgttgtt-ggaagaacaacacaaaaagggagtttagtgaagagtttgttgttgagattcaatgtgagtacaagaggtgaggagtggtaagttt 44365831  T
Q  161 cag-cattatataaagca------atcattattgagaacaaatagttttt 203  Q
    ||| ||||||||||||||      |||| |||||||||||||||||||||    
T  44365830 cagccattatataaagcaatcaatatcaatattgagaacaaatagttttt 44365781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 61 - 203
Target Start/End: Complemental strand, 44331158 - 44331007
Alignment:
Q  61 aagcactcattgtttggaagaacaattctcaaagggaatttagtgaacaag---ttgttgttgaggttcaaagtgagtacaagagaagagaagtggtaag 157  Q
    |||||||| ||||| ||||||||||  |  ||||||| ||||||||| |||   ||||||||||| ||||| |||||||||||||  ||| |||||||||    
T  44331158 aagcactcgttgtt-ggaagaacaacacaaaaagggagtttagtgaagaagagtttgttgttgagattcaatgtgagtacaagaggtgaggagtggtaag 44331060  T
Q  158 tttcag-cattatataaagca------atcattattgagaacaaatagttttt 203  Q
    |||| | ||||||||||||||      |||| |||||||||||||||||||||    
T  44331059 tttctgccattatataaagcaatcaatatcaatattgagaacaaatagttttt 44331007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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