View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15087_low_3 (Length: 494)

Name: NF15087_low_3
Description: NF15087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15087_low_3
NF15087_low_3
[»] chr2 (5 HSPs)
chr2 (1-164)||(24455816-24455979)
chr2 (1-226)||(1615114-1615317)
chr2 (325-418)||(1615407-1615500)
chr2 (325-421)||(24455185-24455282)
chr2 (164-227)||(24455382-24455445)
[»] chr3 (3 HSPs)
chr3 (1-164)||(49233819-49233982)
chr3 (1-164)||(49234390-49234554)
chr3 (336-417)||(48909245-48909326)
[»] chr1 (6 HSPs)
chr1 (1-164)||(50862495-50862658)
chr1 (88-145)||(47723980-47724037)
chr1 (88-145)||(47730972-47731029)
chr1 (340-407)||(35361052-35361119)
chr1 (87-164)||(1380320-1380397)
chr1 (87-159)||(7313512-7313584)
[»] chr8 (5 HSPs)
chr8 (1-164)||(43228052-43228215)
chr8 (344-420)||(43227416-43227492)
chr8 (1-119)||(14839131-14839249)
chr8 (167-216)||(43227613-43227662)
chr8 (85-158)||(38853602-38853674)
[»] chr7 (4 HSPs)
chr7 (1-119)||(27962441-27962559)
chr7 (87-164)||(1480558-1480635)
chr7 (171-205)||(45832170-45832204)
chr7 (86-163)||(3597971-3598048)
[»] chr6 (2 HSPs)
chr6 (124-163)||(26842238-26842277)
chr6 (87-164)||(19180362-19180439)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 24455979 - 24455816
Alignment:
Q  1 atcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgatgttgcactacattagtccacatgccgaaaaccagctctaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  24455979 atcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgctgttgcattacattagtccacatgccgaaaaccagctctaa 24455880  T
Q  101 attatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctct 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24455879 attatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctct 24455816  T

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Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 1615114 - 1615317
Alignment:
Q  1 atcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgatgttgcactacattagtccacatgccgaaaaccagctctaa 100  Q
    |||||||||  |||| |||||||| ||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||  |||||||||||||||    
T  1615114 atcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaa 1615213  T
Q  101 attatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctctatatagtcattcttctttcaagcttcacaatattga 200  Q
    |||||||||||||||||||||||||| ||||||| ||||||                      |||||||||||||||||||||||||||||||| ||||    
T  1615214 attatgcagaaaatcacctcgatctctctccaaactatgca----------------------tatatagtcattcttctttcaagcttcacaatgttga 1615291  T
Q  201 atttgcctaacaaaaatagaatgaga 226  Q
    ||||||||| |||||| |||||||||    
T  1615292 atttgcctaccaaaaacagaatgaga 1615317  T

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Target: chr2; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 325 - 418
Target Start/End: Original strand, 1615407 - 1615500
Alignment:
Q  325 ctgtccaaatttcatcttctcatcaaagcatcactcttcatcatcttcagcgtatgaattcaaatctagccacaccaccatccataaaataagg 418  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1615407 ctgtccaattttcatcttctcatcaaagcatcactcttcatcatcttcagcgtatgaattcaaacctagccacaccaccatccataaaataagg 1615500  T

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Target: chr2; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 325 - 421
Target Start/End: Complemental strand, 24455282 - 24455185
Alignment:
Q  325 ctgtccaaatttcatcttctcatcaaagcatcactcttcatcatcttcagcgtatgaa-ttcaaatctagccacaccaccatccataaaataaggaag 421  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  24455282 ctgtccaaatttcatcttctcataaaagcatcactcttcatcatcttcagcgtatgaatttcaaatctagccacaccaccatccataaaatacggaag 24455185  T

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Target: chr2; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 24455445 - 24455382
Alignment:
Q  164 tatatagtcattcttctttcaagcttcacaatattgaatttgcctaacaaaaatagaatgagat 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24455445 tatatagtcattcttctttcaagcttcacaatattgaatttgcctaacaaaaatagaatgagat 24455382  T

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Target: chr3 (Bit Score: 128; Significance: 6e-66; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 49233819 - 49233982
Alignment:
Q  1 atcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgatgttgcactacattagtccacatgccgaaaaccagctctaa 100  Q
    |||| |||| |||||||||| ||| |||||| |||||||||| | ||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  49233819 atcaaaacacagggaggaaagaatgccactatgtagcagctgtagtaccaaaacactgctgctgcactacattagtccacatgccgaaaaccagctctaa 49233918  T
Q  101 attatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctct 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49233919 attatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctct 49233982  T

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Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 49234390 - 49234554
Alignment:
Q  1 atcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgatgttgcactacattagtccacatgccgaaaaccagctctaa 100  Q
    ||||||||| |||||||||||||| |||||| |||||||||||| ||||||||||||| || |||| |||||||| |||||||| |||||||||||||||    
T  49234390 atcagaacacagggaggaaaaaatgccactatgtagcagctgcagtaccaaaacactgctgctgcattacattagcccacatgcagaaaaccagctctaa 49234489  T
Q  101 attatgc-agaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctct 164  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  49234490 attatgcaagaaaatcacctcgatctcgctccaaattatgcataaaattaccttgaaccagctct 49234554  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 417
Target Start/End: Original strand, 48909245 - 48909326
Alignment:
Q  336 tcatcttctcatcaaagcatcactcttcatcatcttcagcgtatgaattcaaatctagccacaccaccatccataaaataag 417  Q
    |||||||||||||||||| ||||||| ||||||||||| | | |||| ||||  ||||| | ||||||||||||||||||||    
T  48909245 tcatcttctcatcaaagcctcactctccatcatcttcaacatttgaactcaagcctagcaagaccaccatccataaaataag 48909326  T

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Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 50862658 - 50862495
Alignment:
Q  1 atcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgatgttgcactacattagtccacatgccgaaaaccagctctaa 100  Q
    ||||||||| |||||||||||||  |||||| ||| |||||||| ||||||| || || || | |||||||||||||||||||||||||| |||||||||    
T  50862658 atcagaacacagggaggaaaaaacgccactatgtaccagctgcagtaccaaagcagtgctgatacactacattagtccacatgccgaaaatcagctctaa 50862559  T
Q  101 attatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctct 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  50862558 attatgcagaaaatcacctcgatctcgctccaaattatgcagaaaactaccttgaaccagctct 50862495  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 47724037 - 47723980
Alignment:
Q  88 aaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaa 145  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47724037 aaaccagctctaaatgatgcagaaaatcacctcgatctcgctccaaattatgcagaaa 47723980  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 47731029 - 47730972
Alignment:
Q  88 aaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaa 145  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47731029 aaaccagctctaaatgatgcagaaaatcacctcgatctcgctccaaattatgcagaaa 47730972  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 407
Target Start/End: Original strand, 35361052 - 35361119
Alignment:
Q  340 cttctcatcaaagcatcactcttcatcatcttcagcgtatgaattcaaatctagccacaccaccatcc 407  Q
    |||||||||||||  ||||||||||||||||||| | |||||| ||||||  ||||||||||||||||    
T  35361052 cttctcatcaaagtctcactcttcatcatcttcaacctatgaactcaaatagagccacaccaccatcc 35361119  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 87 - 164
Target Start/End: Complemental strand, 1380397 - 1380320
Alignment:
Q  87 aaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctct 164  Q
    |||| ||||||| || ||||||||| || ||||||| | |||||||||||||| ||||||||| ||| ||||| ||||    
T  1380397 aaaatcagctctgaactatgcagaatattacctcgaacacgctccaaattatgaagaaaattatcttaaaccatctct 1380320  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 7313584 - 7313512
Alignment:
Q  87 aaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaacca 159  Q
    |||| ||||||| || ||||||||| || ||||||| | |||||||||||||| ||||||||| ||| |||||    
T  7313584 aaaatcagctctgaactatgcagaatattacctcgaacacgctccaaattatgaagaaaattatcttaaacca 7313512  T

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Target: chr8 (Bit Score: 96; Significance: 7e-47; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 43228215 - 43228052
Alignment:
Q  1 atcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgatgttgcactacattagtccacatgccgaaaaccagctctaa 100  Q
    ||||||||  |||||||||||||  |||| | |||| ||||||| | | ||||||||| || ||||||||||||||||||||||||||| ||| ||||||    
T  43228215 atcagaacgcagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagccaactctaa 43228116  T
Q  101 attatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctct 164  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||    
T  43228115 attatgcagaaaatcaccccgatctcactccaaattatgcagaaaattaccttgaaccaactct 43228052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 344 - 420
Target Start/End: Complemental strand, 43227492 - 43227416
Alignment:
Q  344 tcatcaaagcatcactcttcatcatcttcagcgtatgaattcaaatctagccacaccaccatccataaaataaggaa 420  Q
    |||||||||||||||||||  ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  43227492 tcatcaaagcatcactctttgtcatcttcaacgtatgaattcaaacctagccacaccaccatccataaaataaggaa 43227416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 14839249 - 14839131
Alignment:
Q  1 atcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgatgttgcactacattagtccacatgccgaaaaccagctctaa 100  Q
    |||||||| ||||||||||||||  || ||||||||||| |||| ||||||||||| |  | |||| |||||||||||| |||| |||||||||||||||    
T  14839249 atcagaacgtagggaggaaaaaactccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaaccagctctaa 14839150  T
Q  101 attatgcagaaaatcacct 119  Q
    | ||||  |||||| ||||    
T  14839149 actatgtcgaaaattacct 14839131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 43227662 - 43227613
Alignment:
Q  167 atagtcattcttctttcaagcttcacaatattgaatttgcctaacaaaaa 216  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43227662 atagtcattcttctttcaagcttcacaatgttgaatttgcctaacaaaaa 43227613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 85 - 158
Target Start/End: Original strand, 38853602 - 38853674
Alignment:
Q  85 cgaaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaacc 158  Q
    ||||| |||||||||||||||| ||||||| |||| || ||| | || |||| |||||||||||||||||||||    
T  38853602 cgaaatccagctctaaattatgaagaaaattaccttgaactctcgcc-aattctgcagaaaattaccttgaacc 38853674  T

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Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 27962441 - 27962559
Alignment:
Q  1 atcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgatgttgcactacattagtccacatgccgaaaaccagctctaa 100  Q
    |||||||| ||||||||||||||  || ||||||||||| |||| ||||||||||| |  | |||| |||||||||||| |||| |||||||||||||||    
T  27962441 atcagaacgtagggaggaaaaaactccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaaccagctctaa 27962540  T
Q  101 attatgcagaaaatcacct 119  Q
    | ||||  |||||| ||||    
T  27962541 actatgtcgaaaattacct 27962559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 87 - 164
Target Start/End: Complemental strand, 1480635 - 1480558
Alignment:
Q  87 aaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctct 164  Q
    |||||||||||| || | |||||||||| ||||| | || ||||||||||| ||| ||||| ||||||||||| ||||    
T  1480635 aaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactct 1480558  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 205
Target Start/End: Complemental strand, 45832204 - 45832170
Alignment:
Q  171 tcattcttctttcaagcttcacaatattgaatttg 205  Q
    |||||||| ||||||||||||||||||||||||||    
T  45832204 tcattcttttttcaagcttcacaatattgaatttg 45832170  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 3597971 - 3598048
Alignment:
Q  86 gaaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctc 163  Q
    ||||||||||||| |||||||||||||| ||||  || || ||||  |||||| ||||||||||| |  |||||||||    
T  3597971 gaaaaccagctctgaattatgcagaaaaccaccaggaacttgctctgaattattcagaaaattacttcaaaccagctc 3598048  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 26842277 - 26842238
Alignment:
Q  124 ctcgctccaaattatgcagaaaattaccttgaaccagctc 163  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  26842277 ctcgctccaaattatgcagaaaattaccttggaccagctc 26842238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 87 - 164
Target Start/End: Complemental strand, 19180439 - 19180362
Alignment:
Q  87 aaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctct 164  Q
    |||||||||||| || | |||||||||| ||||| | || ||||||||||| ||| ||||| ||||||||||| ||||    
T  19180439 aaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactct 19180362  T

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