View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15087_low_5 (Length: 472)
Name: NF15087_low_5
Description: NF15087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15087_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 15452783 - 15453237
Alignment:
| Q |
1 |
accattacctaccaaattcttctccacaggaattacagcagcaatactccaaacttctttaagggcccttgctttcaatgttgcagccccacgcaatgct |
100 |
Q |
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| T |
15452783 |
accattacctaccaaattcttctccacaggaattacagcagcaatactccaaacttctttaagggcccttgctttcaatgttgcagccccacgcaatgct |
15452882 |
T |
|
| Q |
101 |
acgatttcaaaccacaaacaccataaattaattaacaactatatgnnnnnnnnnnnnnncatttaagccagtcattttcatgaaataatcaatttaacca |
200 |
Q |
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| T |
15452883 |
acgatttcaaaccacaaacaccataaattaatcaacaactatatgttttttccttttttcatttaagccagtcattttcatgaaataatcaatttaacca |
15452982 |
T |
|
| Q |
201 |
acattccaatgagactgaaaaagctaataatttaacacatttaagttaaactattcttctgaataaatcatttttatgattaatctcatataaacaatca |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15452983 |
acattccaatgagactgaaaaagttaataatttaacacatttaagttaaactattcttctgaataaatcatttttatgattaatctcatataaacaatca |
15453082 |
T |
|
| Q |
301 |
caaataaaaagataaattatgtcgccgcatacctgtcgcagcagcagccgtcaacgtttgaatatcgccggaagacctcacattcacagcagagctaacc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15453083 |
caaataaaaagataaattatgtcgccgcatacctgtcgcagcagcagccgtcaacgtttgaatatcgccggaagacctcacattcacagcagagctaacc |
15453182 |
T |
|
| Q |
401 |
accgaatcaatgtgatcgcgctcagcccccatagccacagcagcatcaacacatt |
455 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
15453183 |
accgaatcaatgtgatcgcgctcagcccccatagccacagcagcctcaacacatt |
15453237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 46577370 - 46577460
Alignment:
| Q |
12 |
ccaaattcttctccacaggaattacagcagcaatactccaaacttctttaagggcccttgctttcaatgttgcagccccacgcaatgctac |
102 |
Q |
| |
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||||||| ||||||||||||| || || |||||| ||||||||||||| | ||||| |||||||||||||||||||||||||| ||||| |
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| T |
46577370 |
ccaaatttctctccacaggaatcactgctgcaatattccaaacttctttcaatgccctcgctttcaatgttgcagccccacgcaaagctac |
46577460 |
T |
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