View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15087_low_7 (Length: 392)
Name: NF15087_low_7
Description: NF15087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15087_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 15 - 382
Target Start/End: Complemental strand, 51270264 - 51269897
Alignment:
| Q |
15 |
aagaatcactgtagtcaaactttccaattgtctccaatgtgtcagggtctatcactattgaccctttttgtgtctccgtcaaacaaaccaccctcccatc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51270264 |
aagaatcactgtagtcaaactttccaattgtctccaatgtgtcagggtctatcactattgaccctttttgtgtctccgtcaaacaaaccaccctcccatc |
51270165 |
T |
|
| Q |
115 |
accgagcttcacgacgcctgtgttggcattgtcggtaagtgaggaaccggagaaaaggtttgctagctcccctacataggctaagaaattttcagcctta |
214 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51270164 |
accgagcttcaccacgcctgtattggcattgtcggtaagtgaggaaccggagaaaaggtttgctagctcccctacataggctaagaaattttcagcctta |
51270065 |
T |
|
| Q |
215 |
gggacttcagaaaattcacgataacatatcttctgatttttctttgctgcttgataagcttgagattcaacttgccgatggccggctactaaccgcccat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51270064 |
gggacttcagaaaattcacgataacatatcttctgatttttctttgctgcttgataagcttgagattcaacttgccgatggccggctactaaccgcccat |
51269965 |
T |
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| Q |
315 |
cctcgaagtgaaggccgaccaaggtggcgtacccgtcaaagaggtgcctgaagttgtagtcccctatg |
382 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51269964 |
cctcgaagtgaaggccgaccaaggtggcgtacccgtcaaagaggtgcctgaagttgtagtcccctatg |
51269897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 15 - 382
Target Start/End: Complemental strand, 23308397 - 23308030
Alignment:
| Q |
15 |
aagaatcactgtagtcaaactttccaattgtctccaatgtgtcagggtctatcactattgaccctttttgtgtctccgtcaaacaaaccaccctcccatc |
114 |
Q |
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|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
23308397 |
aagaatcactgtactcaaattttccaattgtctccaatgtgtcagggtctatcactatcgaccctttttgtgtctccgtcagacaaaccaccctcccatc |
23308298 |
T |
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| Q |
115 |
accgagcttcacgacgcctgtgttggcattgtcggtaagtgaggaaccggagaaaaggtttgctagctcccctacataggctaagaaattttcagcctta |
214 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
23308297 |
gccgagcttcaccacgcctgtgtttgcattgtcggtaagtgaggaaccagagaaaaggcttgcaagctcccctacataggctaagaaattttcagcctta |
23308198 |
T |
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| Q |
215 |
gggacttcagaaaattcacgataacatatcttctgatttttctttgctgcttgataagcttgagattcaacttgccgatggccggctactaaccgcccat |
314 |
Q |
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|| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
23308197 |
ggcacttcagaaaattcacggtaacatatcttctgatttttcattgctgcttgataagcttgagattcaacttgccgatggccggctattaaccgcccgt |
23308098 |
T |
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| Q |
315 |
cctcgaagtgaaggccgaccaaggtggcgtacccgtcaaagaggtgcctgaagttgtagtcccctatg |
382 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23308097 |
cctcaaagtgaagcccgaccaaggtggcgtacccgtcaaagaggtgcctgaagttgtagtcacctatg |
23308030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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