View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15087_low_8 (Length: 298)
Name: NF15087_low_8
Description: NF15087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15087_low_8 |
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| [»] scaffold0074 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 6 - 258
Target Start/End: Complemental strand, 36466764 - 36466512
Alignment:
| Q |
6 |
aggagcatataagtctatatgagcaatttcatgtaccgatagcagttcctgttttggtttagtagctggtgtttttatatttttcatatagttctgtttt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36466764 |
aggagcatataagtctatatgagcaatttcatgtaccgatagcagttcctgttttggtttagtagctggtgtttttatatttttcatatagttctgtttt |
36466665 |
T |
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| Q |
106 |
tcagttaattgttatgtgttacgatcctattatataatctatgttgttttgcatctttgtcaatgagagtccacttttaatgcttttagatagaaaggca |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36466664 |
tcagttaattgttatgtgttacgatcctattatataatctatgttgttttgcatctttgtcaatgagagtccacttttaatgcttttagatagaaaggca |
36466565 |
T |
|
| Q |
206 |
agtgataaatggatttgagattcaagttcctcttttgcatcctcttttaatgc |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36466564 |
agtgataaatggatttgagattcaagttcctcttttgcatcctcttttaatgc |
36466512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 224
Target Start/End: Original strand, 21189979 - 21190200
Alignment:
| Q |
6 |
aggagcatataagtctatatgagcaatttcatgtaccgatagcagttcctgttttggtttagtagctggtgtttttatatttttcatatagttctgtttt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21189979 |
aggagcatataagtctatatgagcaatttcatgtactgatagcagttcctgttctggtttagtagctggtgtttttataattttcatatagttctgtttt |
21190078 |
T |
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| Q |
106 |
tcagttaattgttatgtgttacgatcctattatataatctatgttgttttgcatctttgtcaat---gagagtccacttttaatgcttttagatagaaag |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21190079 |
tcagttaattgttatgtgttacgatcctattatataatctatgttgttttgcatctctgtcaatctagagagtccacttttaatgcttttagatagaaag |
21190178 |
T |
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| Q |
203 |
gcaagtgataaatggatttgag |
224 |
Q |
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||||||||| |||||||||||| |
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| T |
21190179 |
gcaagtgatcaatggatttgag |
21190200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 21190991 - 21191034
Alignment:
| Q |
215 |
tggatttgagattcaagttcctcttttgcatcctcttttaatgc |
258 |
Q |
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| T |
21190991 |
tggatttgagattcaagttcctcttttgcatcctcttttaatgc |
21191034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 20625845 - 20625920
Alignment:
| Q |
6 |
aggagcatataagtctatatgagcaatttcatgtaccgatagcagttcctgttttggtttagtagctggtgttttt |
81 |
Q |
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|||||||||||| ||| ||||| |||| |||||||| ||| |||||||||||||||||||| ||| |||||||||| |
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| T |
20625845 |
aggagcatataaatctttatgaccaatgtcatgtactgatggcagttcctgttttggtttaatagttggtgttttt |
20625920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 8697060 - 8697147
Alignment:
| Q |
25 |
tgagcaatttcatgtaccgatagcagttcctgttttggtttagtagctggtgtttttatatttttcatatagttctgtttttcagtta |
112 |
Q |
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|||||||| | |||||| ||| |||||||||||| ||||||||||| || ||||||| | || ||||||||||| ||||||||||||| |
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| T |
8697060 |
tgagcaatgttatgtactgatggcagttcctgttctggtttagtagttgatgtttttctgttcttcatatagttttgtttttcagtta |
8697147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 18388283 - 18388397
Alignment:
| Q |
47 |
gcagttcctgttttggtttagtagctggtgtttttatatttttcatatagttctgtttttcagttaattgttatgtgttacgatcctattatataatcta |
146 |
Q |
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||||||| |||| ||||||||||| |||||||||| |||| |||| |||| || |||||||||| || ||||| |||| ||||| |||||||||||| |
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| T |
18388283 |
gcagttcttgttctggtttagtagttggtgtttttctattcttcacttagtcttgcttttcagttatgtgctatgtattaccatcctgttatataatcta |
18388382 |
T |
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| Q |
147 |
tgttgttttgcatct |
161 |
Q |
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| | ||||||||||| |
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| T |
18388383 |
tatagttttgcatct |
18388397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 19790 - 19877
Alignment:
| Q |
25 |
tgagcaatttcatgtaccgatagcagttcctgttttggtttagtagctggtgtttttatatttttcatatagttctgtttttcagtta |
112 |
Q |
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|||||||| | |||||| ||| |||||| ||||| ||||||||||| || ||||||| | || || |||||||| ||||||||||||| |
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| T |
19790 |
tgagcaatgttatgtactgatggcagtttctgttctggtttagtagttgatgtttttctgttctttatatagttttgtttttcagtta |
19877 |
T |
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