View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15087_low_9 (Length: 295)
Name: NF15087_low_9
Description: NF15087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15087_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 280
Target Start/End: Complemental strand, 42849277 - 42849012
Alignment:
| Q |
12 |
attctcatatactgtggtactacgtgaagacaatgcaaaggattactttgttga-tgataaagttaaaaattaaaattccattttgtcttaaatttttgc |
110 |
Q |
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| T |
42849277 |
attctcatatattgtggtactacgtgaagacaatgcaaaggattactttgttgaatgataaagttaaaaactaaaattccaatttgtcttaaatttttgc |
42849178 |
T |
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| Q |
111 |
tctgataagtcaaaggcaaaaagaaaagtggatgacaaaagcatgatttctaatggcagaacaagcatgttgaaatccatgaagggaatagtacttcaca |
210 |
Q |
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| T |
42849177 |
tctgataagtcaaaggcaaaaagaaaagtggatgacaaaagcatgatttctaatggaagaacaagcatgttgaaatccatgaagggaatagtacttcaca |
42849078 |
T |
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| Q |
211 |
tcatcgatcaacaaccttgattttaaacttcgtttccaatttaaatttctagtaaagagataattgtaac |
280 |
Q |
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| T |
42849077 |
tc----atcaacaaccttgattttaaacttcgtttccaatttaaatttctagtaaagagataattgtaac |
42849012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 159
Target Start/End: Complemental strand, 42856106 - 42856026
Alignment:
| Q |
78 |
aaattaaaattccattttgtcttaaatttttgctctgataagtcaaaggcaaaaagaaaagtggatgacaaaagcatgattt |
159 |
Q |
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| T |
42856106 |
aaattgaaattcc-ttttgtcttgaatttttgctatgataagacaaagccaaaaagaaaagtggatgagaaaagcatgattt |
42856026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 181
Target Start/End: Complemental strand, 42862838 - 42862724
Alignment:
| Q |
66 |
tgataaagttaaaaattaaaattccattttgtcttaaatttttgctctgataagtcaaaggcaaaaagaaaagtggatgacaaaagcatgatttctaatg |
165 |
Q |
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| T |
42862838 |
tgataaaggtaaaaatcgaaattccatgt-gtcttgaatttttgctttgataagacaaaggcaaaaggagaaatggatgagaaaagcataattttcaatg |
42862740 |
T |
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| Q |
166 |
gcagaacaagcatgtt |
181 |
Q |
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| T |
42862739 |
gcaacacaaacatgtt |
42862724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 42857693 - 42857614
Alignment:
| Q |
56 |
actttgttga-tgataaagttaaaaattaaaattccattttgtcttaaatttttgctctgataagtcaaaggcaaaaagaa |
135 |
Q |
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| T |
42857693 |
actttgttgaatgataaaggtaaaaattgaaatttcattt-gtcttgaatttttgctatgataaggaaaaggcaaaaagaa |
42857614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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