View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15088_high_2 (Length: 592)
Name: NF15088_high_2
Description: NF15088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15088_high_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 575
Target Start/End: Complemental strand, 54986125 - 54985545
Alignment:
| Q |
1 |
ataatatggagagacaagcatagtagttcattccactaacagacattcctttcattcccttctttgagaatatattcctaaacacaaaggccacattgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54986125 |
ataatatggagagacaagcatagtagttcattccactaacagacattcctttcattcccttctttgagaatatattcctaaacacaaaggccacattgga |
54986026 |
T |
|
| Q |
101 |
tatcatagcccccataaaccctgaaacgtagataagatcagtcaaacaaaatacagattcagcatccaatatcacctcaatctactatgatagaagaaca |
200 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
54986025 |
tatcatagcccccataaaccctgaaacatagataagatcagtcaaacaaaatacagattcagcatcctatatcaactcaatctactatgatagaagaaca |
54985926 |
T |
|
| Q |
201 |
caatcagcatctgaaaatcaaccatgtaaat-----aagtgaatgtagtcttaccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacc |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54985925 |
caatcagcatctgaaaatcaaccatgtaaattaaataagtgaatgtagtcttaccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacc |
54985826 |
T |
|
| Q |
296 |
tccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcaccaagcaagaatcttgatacaagaacactgaaagcaggttctccacttttg |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
54985825 |
tccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcaccaagcaagaattttgatacaagaacactgaaagcaggttctccacttttg |
54985726 |
T |
|
| Q |
396 |
attatgtgtgtaaatgaaactgcaactttggacatactcacagtagccgcaacatgcccaattgtatgtgccacagcaacctgcagtttaaattct-cat |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
54985725 |
attatgtgtgtaaatgaaactgcaactttggacatactcacagtagccgcaacatgcccaattgtatgtgccacagcaacctgcagtttaaattctccat |
54985626 |
T |
|
| Q |
495 |
tcagtactaaatcaatatttccgtatttcaaaagcaagaatcttacttgatgcaaaagtctcatattctagttttagtata |
575 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
54985625 |
tcagtactaaatcaatatttccgtatttcaaaagcaagaatcttacttgatgcaaaagtctcatattctagctttaatata |
54985545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 7e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 247 - 477
Target Start/End: Complemental strand, 7883437 - 7883207
Alignment:
| Q |
247 |
taccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcacc |
346 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||| ||||| | | ||| ||||||||| | | |||||| ||||| || |
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|
| T |
7883437 |
taccaatcatattgaaattgagttctgttacagcagctagtgcacaaccaccaattattggcaacaatgagaggtaaactggcatagggaatgcttctcc |
7883338 |
T |
|
| Q |
347 |
aagcaagaatcttgatacaagaacactgaaagcaggttctccacttttgattatgtgtgtaaatgaaactgcaactttggacatactcacagtagccgca |
446 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| ||||||||||| ||||| ||||| || ||||||||||| |||||||||||||||||||| || ||| |
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| T |
7883337 |
aagcaagaatcttgatactagcacactgaaagctggttctccactcttgatgatgtgagtgaatgaaactgctactttggacatactcacagttgcagca |
7883238 |
T |
|
| Q |
447 |
acatgcccaattgtatgtgccacagcaacct |
477 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| |
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|
| T |
7883237 |
acatgcccaattgtgtgtgccacagctacct |
7883207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 7883625 - 7883510
Alignment:
| Q |
12 |
agacaagcatagtagttcattccactaacagacattcctttcattcccttctttgagaatatattcctaaacacaaaggccacattggatatcatagccc |
111 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||| ||||| |||| ||| ||||||||||| | |
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|
| T |
7883625 |
agacaagcataatagttcattccactaacactcattccattcattcctttctttgagaatatattcctaaatacaaatgccaaatttgatatcatagctc |
7883526 |
T |
|
| Q |
112 |
ccataaaccctgaaac |
127 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
7883525 |
ccataaatcctgaaac |
7883510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 246 - 483
Target Start/End: Complemental strand, 18396224 - 18395987
Alignment:
| Q |
246 |
ttaccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcac |
345 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||||||||||||| || ||||| ||||| | || || || || ||| | | ||||| | ||||| |
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|
| T |
18396224 |
ttaccaatcatattgaaattgagttcagtcacagcagcaagtgcacatccaccaatgattggaattaaagacagatagactggcacggggaaggtttcac |
18396125 |
T |
|
| Q |
346 |
caagcaagaatcttgatacaagaacactgaaagcaggttctccacttttgattatgtgtgtaaatgaaactgcaactttggacatactcacagtagccgc |
445 |
Q |
| |
|
| | | ||||| || || |||||||| |||||||| || ||||| ||||| || |||||||| || || || |||||||||||||| || |||||||| |
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|
| T |
18396124 |
ccaagataaatctcgaaaccagaacactaaaagcaggctcgccactcttgatgatatgtgtaaacgacacagccactttggacatactaaccgtagccgc |
18396025 |
T |
|
| Q |
446 |
aacatgcccaattgtatgtgccacagcaacctgcagtt |
483 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||| |||| |
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|
| T |
18396024 |
gacatgtccaattgtgtgtgcaacagcaacctgaagtt |
18395987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 18396645 - 18396534
Alignment:
| Q |
14 |
acaagcatagtagttcattccactaacagacattcctttcattcccttctttgagaatatattcctaaacacaaaggccacattggatatcatagccccc |
113 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||| ||||| ||||| || ||||| || || | |||||||| |||| ||| ||||||||||||||| |
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|
| T |
18396645 |
acaagcatagtaattcattccactaacagactttcccttcatcccctttttcgagaagatgttgcggaacacaaatgccagatttgatatcatagccccc |
18396546 |
T |
|
| Q |
114 |
ataaaccctgaa |
125 |
Q |
| |
|
||||| |||||| |
|
|
| T |
18396545 |
ataaaacctgaa |
18396534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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