View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15088_high_3 (Length: 590)
Name: NF15088_high_3
Description: NF15088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15088_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 10 - 587
Target Start/End: Complemental strand, 1350214 - 1349636
Alignment:
| Q |
10 |
aagaatatgaatcaaattataaccatttagttgaacacgagtggctaatgagcattagttaaggacaaaccgttcaggagaatccgaatttgaatcctta |
109 |
Q |
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| T |
1350214 |
aagaatatgaatcaaattataaccatttagttgaacacgagtggctaatgagcattagttaaggacaaaccgttcaggagaatccgaatttgaatcctta |
1350115 |
T |
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| Q |
110 |
gtgaaacatcattggatctgaatttacttatctcctagacaaactctaaattaacaggctacttttccgctgaaaatcgaagggttagacaaaaaa-tat |
208 |
Q |
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| T |
1350114 |
gtgaaacatcattgtatctgaatttacttatctcctagacaaactctaaattaacaggctacttttccgctgaaaatcgaagggttagacaaaaaaatat |
1350015 |
T |
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| Q |
209 |
aaccatattagagtgaacattgtaaaggtgtgcactgtgcagtatatacctttaagtggtgttaggcctctttccgtgagattcttgatttgtttgtagc |
308 |
Q |
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| T |
1350014 |
aaccatattagagtgaacattgtaaaggtgtgcactgtgcagtatatacctttaagtggtgttaggcctctttccgtgagattcttgatttgtttgtagc |
1349915 |
T |
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| Q |
309 |
tcatgaaaacacaagcactatgagcccaaaagagaacattaggcaacccaaattgcagagaagcttgaatagtgaaagacatgacaccatctgatattat |
408 |
Q |
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| T |
1349914 |
tcatgaaaacacaagcactatgagcccaaaagagaacattaggcaacccaaattgccgagaagcttgaatagtgaaagacatgacaccatctgatattat |
1349815 |
T |
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| Q |
409 |
gcaagtaactggaggatcattgagttttgatacaagtttacaaaatggtaccaaacagtttttacttgtagagtcacaaagatcaggaatgctttgagtt |
508 |
Q |
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| T |
1349814 |
gcaagtaactggaggatcattgagttttgatacaagtttacaaaatggtaccaaacagtttttacttgtagagtcacaaagatcaggaatgctttgagtt |
1349715 |
T |
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| Q |
509 |
gcatccatgttgtttgtgggagggagaccatctgggatggtttcaaattggaaatcttgcaaacaattgacaacattag |
587 |
Q |
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| T |
1349714 |
gcatccatgttgtttgtgggagggagaccatctgggatggtttcaaattggaaatcttgcaaacaattgacaacattag |
1349636 |
T |
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