View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15088_high_6 (Length: 489)
Name: NF15088_high_6
Description: NF15088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15088_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 41 - 461
Target Start/End: Complemental strand, 18589181 - 18588761
Alignment:
| Q |
41 |
ctcttgtatttgttaaattaattaattgggtattatgttgtaaatagtcttattattattgttttacgacgcttctactaattgtaacacattgtaattg |
140 |
Q |
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| T |
18589181 |
ctcttttatttgttaaattaattaattgggtattatgttgtaaatagtcttattaatattgttttacgacgcttctactaattgtaacacattgtaattg |
18589082 |
T |
|
| Q |
141 |
atctagattgttcataaaaaacagaggtgttcggctattgtgagattcggttcctgtgtttgcacttgatctgggtatatctcaggtcgagtgagaagaa |
240 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||| | || ||||| |
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| T |
18589081 |
atctagattgttcataaaaaacagaggtgttcgactattgtgagattcggttcctgtgtttgcacttgatctggctatatctcgggttgttagataagaa |
18588982 |
T |
|
| Q |
241 |
agtttagggtttgaacagtggtgaattgtcgcaatggagaaaatactaacatgacaattcacatactaacctatgatattcaaaacaaaaagtggtgagt |
340 |
Q |
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| T |
18588981 |
agtttagggtttgaacagtggtgaattgtcgcaatggagaaaatactaacatgacaatttacatactaacatatgatattcgaaacaaaaagtggtgagt |
18588882 |
T |
|
| Q |
341 |
tggagtatggggaggttaagggttcgatatcctctcttaagagtcccaaattagatgagataataagacctgaaaatgggtttataagtaggaggcttcc |
440 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
18588881 |
tggagtatggggaggttaagggttcgatatcctctcttaagagtcccaaattagatgagatagtaagagctgaaaatgggtttataagtaggaggcttcc |
18588782 |
T |
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| Q |
441 |
ctcactctacaagccagtttt |
461 |
Q |
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|||||| |||||||| ||||| |
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| T |
18588781 |
ctcactatacaagccggtttt |
18588761 |
T |
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Back To:
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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 3185888 - 3185939
Alignment:
| Q |
410 |
ctgaaaatgggtttataagtaggaggcttccctcactctacaagccagtttt |
461 |
Q |
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||||||||| ||||||| || | |||| |||||||||||||||||||||||| |
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| T |
3185888 |
ctgaaaatgagtttatatgtggtaggcatccctcactctacaagccagtttt |
3185939 |
T |
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