View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15088_low_1 (Length: 437)
Name: NF15088_low_1
Description: NF15088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15088_low_1 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 32 - 437
Target Start/End: Complemental strand, 33351838 - 33351449
Alignment:
| Q |
32 |
aaacagacgacctttcaagcacaccggattgataagacctttactaaatgtttactgcactcaattatctataaatcgtaccacattctataacaccaac |
131 |
Q |
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| T |
33351838 |
aaacagacgacctttcaagcacaccggtttgataagccctttactaaatgcttactgcactcaattatctatcaatcataccacattctataacaccaac |
33351739 |
T |
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| Q |
132 |
acttctaatcaaaggcgtccaacactgacacatgtaattacgctgaagtattttattttctcaaattattattcaggtcaacgtttctgtgtcagtgtcg |
231 |
Q |
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| T |
33351738 |
actg-----------------acactgacacatgtaattacaccgaagtattttattttctcaaattattattcaggtcaacgtgtctgtgtcagtgtcg |
33351656 |
T |
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| Q |
232 |
-tgtctatcaaaaataacaaacagttggtaggtaccctcctataagcatcaccagcatcagcaaaagcataaacagacccaggttgttgaaaccccaaat |
330 |
Q |
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| T |
33351655 |
gtgtctatgaaaaataacaaacagttggtaggtaccctcttatgagcatcaccagcatcagcaaaagcataaacagactcaggttgttgaaaccccaaat |
33351556 |
T |
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| Q |
331 |
accgttcagacaattcaacatactcctccaccggctggtcccactgagcagcacgttgcttcacttcatcttccgatgctaacaaaattcagaaacaacc |
430 |
Q |
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| T |
33351555 |
accgttcagacaattcaacatactcctccaccggctggtcccactgagcagcacgttgcttcacttcatcttccgatgctaacaaaattcagaaacaacc |
33351456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 1864877 - 1864931
Alignment:
| Q |
148 |
gtccaacactgacacatgtaattacgctgaagtattttattttctcaaattatta |
202 |
Q |
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| T |
1864877 |
gtccaacaccgacacatataattacactgaattatgtgattttctcaaattatta |
1864931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 7918213 - 7918295
Alignment:
| Q |
153 |
acactgacacatgtaattacgctgaagtattttattttctcaaattattattcaggtcaacgtttctgtgtcagtgtcgtgtc |
235 |
Q |
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| T |
7918213 |
acactgacacatataattacactgaattatgtgattttctcaaattattagtgatgtcagcgtgtcattgtctgtgtcgtgtc |
7918295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 34712385 - 34712434
Alignment:
| Q |
153 |
acactgacacatgtaattacgctgaagtattttattttctcaaattatta |
202 |
Q |
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| T |
34712385 |
acactgacacatataattacactaaattatgttattttctcaaattatta |
34712434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 44605140 - 44605192
Alignment:
| Q |
152 |
aacactgacacatgtaattacgctgaagtattttattttctcaaattattatt |
204 |
Q |
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| T |
44605140 |
aacaccgacacatgtaattacattgaattatgttattttctcaaattattatt |
44605192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 5548733 - 5548686
Alignment:
| Q |
153 |
acactgacacatgtaattacgctgaagtattttattttctcaaattat |
200 |
Q |
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| T |
5548733 |
acactgacacatataattacactgaattatttgattttctcaaattat |
5548686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 23191953 - 23191904
Alignment:
| Q |
153 |
acactgacacatgtaattacgctgaagtattttattttctcaaattatta |
202 |
Q |
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| T |
23191953 |
acactgaaacatgtaattacactgaaatatgtgattttctcaaattatta |
23191904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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