View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15089_high_2 (Length: 388)
Name: NF15089_high_2
Description: NF15089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15089_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 131 - 370
Target Start/End: Complemental strand, 30810469 - 30810232
Alignment:
| Q |
131 |
ctttccaagcacgaattactttctagaatattctcaaaaacgcacctgcttggctcgttttccaaacacaaacaacatagcatcaataacattactcttc |
230 |
Q |
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| T |
30810469 |
ctttccaagcacgaattactttctagaatattctcaaaaacgcacctgcttggctcgttttccaaacacaaacaacatagcatcaataacattactcttc |
30810370 |
T |
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| Q |
231 |
ccacttccattcggtccaaccacagccgaaaaactctgaaaccaaaatttcaccaaattttaacttcacaagtaaaattgaaccaattaaaccaattgaa |
330 |
Q |
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| T |
30810369 |
ccacttccattcggtccaaccacagccgaaaaactctgaaaccaaaatttcaccaaattttaactt--caagtaaaattgaaccaattaaaccaattgaa |
30810272 |
T |
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| Q |
331 |
ttcaaaaaatggaagaatctaaatcaaaccttatgaaagg |
370 |
Q |
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| T |
30810271 |
ttcaaaaaatggaagaatctaaatcaaaccttatgaaagg |
30810232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 30810610 - 30810504
Alignment:
| Q |
12 |
atgaacagaaaccccagcactatccaaattctgatgattgctagaattatgtataagctccgaaactttattcaatctcatctgcaaccacaagttccca |
111 |
Q |
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| T |
30810610 |
atgaacagaaaccccagcactatccaaattctgatgattgctagaattatgtataagctccgaaactttattcaatctcatctgcaaccacaagttccca |
30810511 |
T |
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| Q |
112 |
attaaac |
118 |
Q |
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| T |
30810510 |
attaaac |
30810504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 192 - 301
Target Start/End: Complemental strand, 36130327 - 36130218
Alignment:
| Q |
192 |
ccaaacacaaacaacatagcatcaataacattactcttcccacttccattcggtccaaccacagccgaaaaactctgaaaccaaaatttcaccaaatttt |
291 |
Q |
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| T |
36130327 |
ccaaatacaaacaacatggcatcaatcacattactctttccacttccattgggtccaaccacagccgaaaaactctgcaacaaaaacttaccaaaatttc |
36130228 |
T |
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| Q |
292 |
aacttcacaa |
301 |
Q |
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| T |
36130227 |
aacttcacaa |
36130218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 36130500 - 36130417
Alignment:
| Q |
15 |
aacagaaaccccagcactatccaaattctgatgattgctagaattatgtataagctccgaaactttattcaatctcatctgcaa |
98 |
Q |
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|||||||||| |||||||||||||||| || |||| | ||||||| |||||||||||||||||||| ||||||| | ||||||| |
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| T |
36130500 |
aacagaaacctcagcactatccaaattgtggtgatcggtagaattgtgtataagctccgaaactttgttcaatcgcctctgcaa |
36130417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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