View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15089_low_1 (Length: 829)
Name: NF15089_low_1
Description: NF15089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15089_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 516; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 66 - 630
Target Start/End: Original strand, 14457228 - 14457792
Alignment:
| Q |
66 |
ctggtagtttatccgttataagttcactgatggataataagtttatatcgaattacttatgagttagtttattatccgctatgttttgccaaatagagct |
165 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14457228 |
ctggtagtttatccgttataagttcacttatggataataagtttatatcgaattacttatgagttagtttattatccgctgtgttttgccaaatagagct |
14457327 |
T |
|
| Q |
166 |
ctaagacactctcgctaataaataattagaacattttatttcttttacaattttatgaatcaatttctctaagagaacgcatgattgttaattaaattac |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14457328 |
ctaagacactctcgctaataaataattagaacattttatttcatttacaattttatgaataaatttctctaagagaacacatgattgttaattaaattac |
14457427 |
T |
|
| Q |
266 |
ttaataaaagttcgtaaaatatatctcaactaaaaatgatgcgattgttggaccggatattttctgatgttatccgagtttaaactaaggatcttccttt |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14457428 |
ttaataaaagttcgtaaaatatatctcaactaaaaatgatgcgattgttggaccggatattttctgatgttatccgagtttaaactaaggatcttccttt |
14457527 |
T |
|
| Q |
366 |
gtgtgttttatgaggtgattgataataataactaatnnnnnnntgtttagggctaaaccctaaaccctaacaaatatcaaattatcaataaatgattcta |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14457528 |
gtgtgttttatgaggtgattgataataataactaataaaaaaatgtttagggctaaaccctaaaccctaacaaatatctaattatcaataaatgattcta |
14457627 |
T |
|
| Q |
466 |
ttgttcaaaatcatttttgaggatttaatggatctgaatcctatagaggtcacaccttgcagggtcagtatggatggatttgaattggatatgagtttag |
565 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14457628 |
ttgttcaaaatcaattttgaggatttaatggatctgaatcctatagaggtcacaccttgcagggtcagtatggatggatttgaattggatatgagtttag |
14457727 |
T |
|
| Q |
566 |
aatttatctctcttatatcttacagctgagtagtagaattttacagtgcagttaaactacaacat |
630 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14457728 |
aatttatctctcttatatcttacagctgagtagtagaattttacagtgcagttaaactacaacat |
14457792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 671 - 826
Target Start/End: Original strand, 14457799 - 14457954
Alignment:
| Q |
671 |
ataataaaaagaaaatcaaactacaacattggcttttcatcagtttgttgtgtgcatggtgaatcttacattcacctcctcttcttgctcgtctcctctt |
770 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
14457799 |
ataataaaaagaaaatcaaactacaacattggctttccatcagcttgttgtgtgcatggtgaatcttacattcgcctcctcttcttgctcgtatcctctt |
14457898 |
T |
|
| Q |
771 |
catacttatcgacaacagcttccaatgctctctttgttggttttggaggtcttcta |
826 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14457899 |
catacttatcgacaacagcttccaatgctctctttgttggttttgaaggtcttcta |
14457954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 635 - 824
Target Start/End: Original strand, 14466638 - 14466825
Alignment:
| Q |
635 |
ataaatatacaatcctaaaaaacatttgtaatcatgataataaaaagaaaatcaaactacaacattggcttttcatcagtttgttgtgtgcatggtgaat |
734 |
Q |
| |
|
||||||| |||||||| |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||| |||||| |||||||||||| ||||||| |
|
|
| T |
14466638 |
ataaatacacaatccttaaaaacatctgtaatcatgatgataaaaagaaaatcaaactgcaacattggcttt-catcagcttgttgtgtgcacggtgaat |
14466736 |
T |
|
| Q |
735 |
cttacattcacctcctcttcttgctcgtctcctcttcatacttatcgacaacagcttccaatgctctctttgttggttttggaggtcttc |
824 |
Q |
| |
|
||||||| | ||||||||| ||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14466737 |
cttacat-cgcctcctcttgttgcttgtttcctcttcgtacttgtcgacaacagcttccaatgctctctttgttggttttggcggtcttc |
14466825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 14456013 - 14456070
Alignment:
| Q |
10 |
agaagcaaaggcgatgagggttttaaacacttgggtgattaaaattgttgtgcttact |
67 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
14456013 |
agaagcagaggcgatgagggttttaaaaacttgggtgattaaaattgttgtggttact |
14456070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 49235189 - 49235241
Alignment:
| Q |
18 |
aggcgatgagggttttaaacacttgggtgattaaaattgttgtgcttactggt |
70 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
49235189 |
aggcgatgaaggttttaaaaacttgggtgattaaaattgttgtgcttactggt |
49235241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 33619470 - 33619519
Alignment:
| Q |
18 |
aggcgatgagggttttaaacacttgggtgattaaaattgttgtgcttact |
67 |
Q |
| |
|
|||||||||||||||||| |||||||||| | ||||||||||||||||| |
|
|
| T |
33619470 |
aggcgatgagggttttaacaacttgggtgaatgaaattgttgtgcttact |
33619519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University