View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15089_low_4 (Length: 340)
Name: NF15089_low_4
Description: NF15089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15089_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 12884992 - 12885304
Alignment:
| Q |
17 |
caagtaagtcatattgtctaagaaatcatcataaatatta-aagagacaaaaacaaaccaaagggagnnnnnnntcatcaaacaattcctttaactaata |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12884992 |
caagtaagtcatattgtctaagaaatcatcataaatattataagagacaaaaacaaaccaaagggagaaaaaaatcatcaaacaattcctttaactaata |
12885091 |
T |
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| Q |
116 |
gtaaaaaatattatatctgcatttactaaaagatcttcacgccttgtttcccaaaaaacattaccaaca----atcatagagaaaaaatccaaaggttga |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
12885092 |
gtaaaaaatattatatctgcatttactaaaagatcttcacgccttgtttcccaaaaaacattaccaacaaacaatcatagagaaaaaatccaaaggctga |
12885191 |
T |
|
| Q |
212 |
catgattctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatgcttaaaattgtagagcaaatatgtgttcaacttaacatctagt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12885192 |
catgattctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatgcttaaaattgtagagcaaatatgtgttcaacttaacatctagt |
12885291 |
T |
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| Q |
312 |
tagtatcttaaag |
324 |
Q |
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||||||||||||| |
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| T |
12885292 |
tagtatcttaaag |
12885304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 284
Target Start/End: Complemental strand, 12992675 - 12992560
Alignment:
| Q |
170 |
aaaacattaccaacaatcatagagaaaaaatccaaaggttga-catgattctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatg |
268 |
Q |
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|||||||||| |||||||||| || ||||||||||||||||| |||||| | ||||||||||||| ||||| ||| ||||| | | |||||||||| | |
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| T |
12992675 |
aaaacattacaaacaatcatatagtaaaaatccaaaggttgatcatgatgttgcttagattcaaatgaaacatagaagtttacaagaacaaaatacaaag |
12992576 |
T |
|
| Q |
269 |
cttaaaattgtagagc |
284 |
Q |
| |
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|||||||| ||||||| |
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| T |
12992575 |
cttaaaatcgtagagc |
12992560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 12914294 - 12914371
Alignment:
| Q |
168 |
aaaaaacattaccaacaatcatagagaaaaaatccaaaggttgacatgattctccttagattcaaatcaaacacagat |
245 |
Q |
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| T |
12914294 |
aaaaaacattaccaacaatcatagaacaaaaatccaaaggttgacacgatacctcttaggttaaaatcaaatacagat |
12914371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 282
Target Start/End: Complemental strand, 12943033 - 12942932
Alignment:
| Q |
181 |
aacaatcatagagaaaaaatccaaaggttgacatgattctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatgcttaaaattgta |
280 |
Q |
| |
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|||||||||||| ||| |||| |||| ||||| || || ||||| ||||||||||| ||| ||||||| | |||||||||||| ||||||| |||||| |
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| T |
12943033 |
aacaatcatagaacaaatatccgaaggctgacaatatacttcttaggttcaaatcaaatacaaatgtttacaataccaaaatacattgcttaatattgta |
12942934 |
T |
|
| Q |
281 |
ga |
282 |
Q |
| |
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|| |
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|
| T |
12942933 |
ga |
12942932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 163
Target Start/End: Original strand, 12921559 - 12921632
Alignment:
| Q |
90 |
tcatcaaacaattcctttaactaatagtaaaaaatattatatctgcatttactaaaagatcttcacgccttgtt |
163 |
Q |
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|||||||||| ||| ||||| ||||||||||||||| |||| ||||| |||||| | ||||||| |||||||| |
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| T |
12921559 |
tcatcaaacagttcttttaaataatagtaaaaaataacatatttgcatgtactaatatatcttcaagccttgtt |
12921632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 14071132 - 14071072
Alignment:
| Q |
216 |
attctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatgcttaaaat |
276 |
Q |
| |
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||||| ||||||||||||||||| ||| |||||||| ||| |||||||||||||||||||| |
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| T |
14071132 |
attctacttagattcaaatcaaatacaaatgtttatggtaacaaaatacaatgcttaaaat |
14071072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 14073919 - 14073859
Alignment:
| Q |
216 |
attctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatgcttaaaat |
276 |
Q |
| |
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||||| ||||||||||||||||| ||| |||||||| ||| |||||||||||||||||||| |
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| T |
14073919 |
attctacttagattcaaatcaaatacaaatgtttatggtaacaaaatacaatgcttaaaat |
14073859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 276
Target Start/End: Complemental strand, 14069593 - 14069500
Alignment:
| Q |
184 |
aatcatagagaaaaaatccaaaggttgac-atgattctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatgcttaaaat |
276 |
Q |
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|||||||||| |||||| ||||||||||| | ||||| ||||||||||||| ||| || |||||||| ||| |||||| ||||||||||||| |
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| T |
14069593 |
aatcatagagcaaaaattcaaaggttgactaaaattctacttagattcaaattaaatgcaaatgtttattgtaacaaaatgcaatgcttaaaat |
14069500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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