View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15089_low_6 (Length: 323)
Name: NF15089_low_6
Description: NF15089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15089_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 33397389 - 33397085
Alignment:
| Q |
1 |
ccaccttttttctattgtgtatgaactgtgtgtttctacaagaggtggttatgttccaatgccatttgctatcacgtgatggtcttgcttctgcaatacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
33397389 |
ccaccttttttctattgtgtatgaactgtgtgtttctacaagagttggttatgttccaatgccatttgctatcacatgatggtcttgcttctgcaatatg |
33397290 |
T |
|
| Q |
101 |
tcagagaccaactttgaattctttctcacttacatgccgtaaggatatttcttcatacttcattgattcattgctgagtttgaagagattaacttgtctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33397289 |
tcagagaccaactttgaattctttctcacttacatgccgtaaggatatttcttcatactccattgattcattgctgagtttgaagagattaacttgtctt |
33397190 |
T |
|
| Q |
201 |
gatttgtccttttcactcatcactgacgagctgctttgcttactagcacttgaagctcttcctttgaggaaacttgtcctccgcaaatgcttcggacata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33397189 |
gatttgtccttttcactcatcactgacgagctgctttgcttactagcacttgaagctcttcctttgaggaaacttgtcctccgcaaatgcttcggacata |
33397090 |
T |
|
| Q |
301 |
caaat |
305 |
Q |
| |
|
||||| |
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| T |
33397089 |
caaat |
33397085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 158 - 282
Target Start/End: Original strand, 33708401 - 33708525
Alignment:
| Q |
158 |
cttcattgattcattgctgagtttgaagagattaacttgtcttgatttgtccttttcactcatcactgacgagctgctttgcttactagcacttgaagct |
257 |
Q |
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| T |
33708401 |
cttcattgattcattgatgagtttgaagcgcttaacttgtcttgatttgtcctattcatgcattactgattcgttgctttactctctaacacttgcagct |
33708500 |
T |
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| Q |
258 |
cttcctttgaggaaacttgtcctcc |
282 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
33708501 |
cttcctttgaggaaacttgtcctcc |
33708525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 154 - 282
Target Start/End: Original strand, 36810396 - 36810524
Alignment:
| Q |
154 |
catacttcattgattcattgctgagtttgaagagattaacttgtcttgatttgtccttttcactcatcactgacgagctgctttgcttactagcacttga |
253 |
Q |
| |
|
|||||||| |||||||||| |||||||||| |||||||||||| ||||||||| |||||| ||| |||| ||||||||| ||||||||||| |
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| T |
36810396 |
catacttcgctgattcattggggagtttgaagggattaacttgtcatgatttgtctttttcatgcatttctgatttcttgctttgctctctagcacttga |
36810495 |
T |
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| Q |
254 |
agctcttcctttgaggaaacttgtcctcc |
282 |
Q |
| |
|
|||||||||||||||| ||||| |||||| |
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| T |
36810496 |
agctcttcctttgagggaacttatcctcc |
36810524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 282
Target Start/End: Complemental strand, 36876290 - 36876162
Alignment:
| Q |
154 |
catacttcattgattcattgctgagtttgaagagattaacttgtcttgatttgtccttttcactcatcactgacgagctgctttgcttactagcacttga |
253 |
Q |
| |
|
||||||| ||||||||||| |||||||||| |||||||||||||||||||||| |||||| ||| |||| ||||||||| ||||||||||| |
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| T |
36876290 |
catactttgttgattcattgtggagtttgaagggattaacttgtcttgatttgtctttttcatgcatttctgatttcttgctttgctctctagcacttga |
36876191 |
T |
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| Q |
254 |
agctcttcctttgaggaaacttgtcctcc |
282 |
Q |
| |
|
||||||||||||| |||||||| |||| |
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| T |
36876190 |
cgctcttcctttgaccaaacttgttctcc |
36876162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 33714265 - 33714324
Alignment:
| Q |
156 |
tacttcattgattcattgctgagtttgaagagattaacttgtcttgatttgtccttttca |
215 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| | |||||||||||||||||||||| |||| |
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| T |
33714265 |
tacttcattgattcattggtgagtttaaagcgcttaacttgtcttgatttgtcctattca |
33714324 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 36810249 - 36810353
Alignment:
| Q |
23 |
gaactgtgtgtttctacaagaggtggttatgttccaatgccatttgctatcacgtgatggtcttgcttctgcaatacgtcagagaccaactttgaattct |
122 |
Q |
| |
|
|||||||| | || || ||||||||||||||||| | |||| ||| ||| |||||| |||| ||||| ||||||| | |||||||| |||||||||||| |
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| T |
36810249 |
gaactgtgagcttttagaagaggtggttatgttcgattgccctttcctaacacgtgctggtattgctactgcaatttgccagagacccactttgaattct |
36810348 |
T |
|
| Q |
123 |
ttctc |
127 |
Q |
| |
|
|||| |
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|
| T |
36810349 |
ctctc |
36810353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 127
Target Start/End: Original strand, 27005006 - 27005101
Alignment:
| Q |
32 |
gtttctacaagaggtggttatgttccaatgccatttgctatcacgtgatggtcttgcttctgcaatacgtcagagaccaactttgaattctttctc |
127 |
Q |
| |
|
|||||||||| | || |||||||| | ||||| || ||| ||| ||||||| ||||||||||||| |||||||| ||||||||||||||||| |
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| T |
27005006 |
gtttctacaacaagtttttatgttcgattgccaattcctaacacatgatggtattgcttctgcaatctaccagagacccactttgaattctttctc |
27005101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 150 - 278
Target Start/End: Original strand, 18723712 - 18723840
Alignment:
| Q |
150 |
tcttcatacttcattgattcattgctgagtttgaagagattaacttgtcttgatttgtccttttcactcatcactgacgagctgctttgcttactagcac |
249 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | |||||||||||||| |||||||||| ||| ||||| ||||||||| ||||||| |
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| T |
18723712 |
tcttcatacttcattgattcattggcgagtttgaagcgcttaacttgtcttgaccagtccttttcatgcattactgatttcttgctttgctctctagcac |
18723811 |
T |
|
| Q |
250 |
ttgaagctcttcctttgaggaaacttgtc |
278 |
Q |
| |
|
||||||||||||||||||| ||||||||| |
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| T |
18723812 |
ttgaagctcttcctttgagcaaacttgtc |
18723840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 3438016 - 3438072
Alignment:
| Q |
152 |
ttcatacttcattgattcattgctgagtttgaagagattaacttgtcttgatttgtc |
208 |
Q |
| |
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|||| |||||||||| | ||| ||||| ||||| |||||||||||||||||||||| |
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|
| T |
3438016 |
ttcacacttcattgacttgttggtgagtctgaagggattaacttgtcttgatttgtc |
3438072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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