View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1508_high_12 (Length: 411)
Name: NF1508_high_12
Description: NF1508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1508_high_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 25071363 - 25071182
Alignment:
| Q |
1 |
cacgaaacttcctagttgttagtaggacagaaccatgtgacttcttggtaatatcattgacaaagattgcttacgattcatttttggacaaatacaagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25071363 |
cacgaaacttcctagttgttagtaggacagaaccatgtgacttcttggtaatatcattgacaaagattgcttacgattcatttttggacaaatacaagag |
25071264 |
T |
|
| Q |
101 |
tccatttaacattagtcacgaaacttcctttgaaacttccatttatgtattgtccatatcaaatgaattaagttcacgagac |
182 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
25071263 |
tccatttaacattagtcatgaaacttcctttaaaacttccatttatgtattatccatatcaaatgaattaagctcacgagac |
25071182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 180
Target Start/End: Original strand, 1744017 - 1744054
Alignment:
| Q |
143 |
ttatgtattgtccatatcaaatgaattaagttcacgag |
180 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
1744017 |
ttatgtattgtccataccaactgaattaagttcacgag |
1744054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 37265195 - 37265231
Alignment:
| Q |
142 |
tttatgtattgtccatatcaaatgaattaagttcacg |
178 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
37265195 |
tttatgtattgtccttatcaactgaattaagttcacg |
37265231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University