View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1508_high_16 (Length: 347)

Name: NF1508_high_16
Description: NF1508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1508_high_16
NF1508_high_16
[»] chr3 (21 HSPs)
chr3 (17-156)||(10359977-10360116)
chr3 (17-156)||(9981141-9981280)
chr3 (230-337)||(9980965-9981072)
chr3 (230-326)||(10360185-10360281)
chr3 (17-111)||(10130686-10130780)
chr3 (17-111)||(10372235-10372329)
chr3 (63-225)||(10264591-10264751)
chr3 (279-326)||(10264483-10264530)
chr3 (146-209)||(10430097-10430160)
chr3 (130-187)||(11772695-11772752)
chr3 (302-337)||(10584471-10584506)
chr3 (129-163)||(10134711-10134745)
chr3 (289-337)||(10035589-10035637)
chr3 (138-177)||(10093176-10093215)
chr3 (138-177)||(10200058-10200097)
chr3 (128-185)||(10130614-10130671)
chr3 (130-163)||(10130846-10130879)
chr3 (130-163)||(10372136-10372169)
chr3 (128-185)||(10372344-10372401)
chr3 (127-156)||(10584614-10584643)
chr3 (289-337)||(10130514-10130562)
[»] scaffold0083 (2 HSPs)
scaffold0083 (17-156)||(53857-53996)
scaffold0083 (230-337)||(54065-54172)


Alignment Details
Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 10359977 - 10360116
Alignment:
Q  17 atataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatacgagcattcatttaaaattacaaattaagaatcacgtcgc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10359977 atataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatacgagcattcatttaaaattacaaattaagaatcacgttgc 10360076  T
Q  117 nnnnnnnnnntgttacaaattaagaatattacaaacccta 156  Q
              ||||||||||||||||||||||||||||||    
T  10360077 aaacaaaaaatgttacaaattaagaatattacaaacccta 10360116  T

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Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 9981280 - 9981141
Alignment:
Q  17 atataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatacgagcattcatttaaaattacaaattaagaatcacgtcgc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  9981280 atataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatatgagcattcatttaaaattacaaattaagaatcacgttgc 9981181  T
Q  117 nnnnnnnnnntgttacaaattaagaatattacaaacccta 156  Q
              ||||||||||||||||||||||||||||||    
T  9981180 aaacaaaaaatgttacaaattaagaatattacaaacccta 9981141  T

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Target: chr3; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 230 - 337
Target Start/End: Complemental strand, 9981072 - 9980965
Alignment:
Q  230 gcaatcaatggaagccgctgagtcttcaatttgtcataaaaaatcaaagaagcagttttcttcaattcatcaagtgagcagattatcatccacatagcta 329  Q
    |||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9981072 gcaatcaatggatgccgctgagtcttcaattcctcataaaaaatcaaagaagcagttttcttcaattcatcaagtgagcagattatcatccacatagcta 9980973  T
Q  330 ggcctttg 337  Q
    ||||||||    
T  9980972 ggcctttg 9980965  T

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Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 230 - 326
Target Start/End: Original strand, 10360185 - 10360281
Alignment:
Q  230 gcaatcaatggaagccgctgagtcttcaatttgtcataaaaaatcaaagaagcagttttcttcaattcatcaagtgagcagattatcatccacatag 326  Q
    ||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10360185 gcaatcaatggaagctgctgagtcttcaattcctcataaaaaatcaaagaagcagttttcttcaattcatcaagtgagcagattatcatccacatag 10360281  T

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Target: chr3; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 10130780 - 10130686
Alignment:
Q  17 atataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatacgagcattcatttaaaattacaaattaagaatcac 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||    
T  10130780 atataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatatgagcattcacttaaagttacaaattaagaatcac 10130686  T

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Target: chr3; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 10372235 - 10372329
Alignment:
Q  17 atataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatacgagcattcatttaaaattacaaattaagaatcac 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||    
T  10372235 atataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatatgagcattcacttaaagttacaaattaagaatcac 10372329  T

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Target: chr3; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 63 - 225
Target Start/End: Complemental strand, 10264751 - 10264591
Alignment:
Q  63 atggttttatcatacgagcattcatttaaaattacaaattaagaatcacgtcgcnnnnnnnnnntgttacaaattaagaatattacaaaccctactgcat 162  Q
    |||||||||||||| ||||||||  ||||| |||||||||||||||||||||             |||||||||||||||||||||||| |||||| |||    
T  10264751 atggttttatcatatgagcattcgcttaaagttacaaattaagaatcacgtc--cgaaaaaaaaagttacaaattaagaatattacaaatcctactacat 10264654  T
Q  163 tgtactttgtctgaccggatcatgcgggatattaggaaacattcaaatgataataaaatacaa 225  Q
    |||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||||||    
T  10264653 tgtactttgtctgatcggatcatgcaggttattacgaaacattcaaatgataataaaatacaa 10264591  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 326
Target Start/End: Complemental strand, 10264530 - 10264483
Alignment:
Q  279 aagcagttttcttcaattcatcaagtgagcagattatcatccacatag 326  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||    
T  10264530 aagcatttttcttcaattcatcaagtgagctgattatcatccacatag 10264483  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 10430097 - 10430160
Alignment:
Q  146 tacaaaccctactgcattgtactttgtctgaccggatcatgcgggatattaggaaacattcaaa 209  Q
    ||||||||||||||||||||| | |||||||||||||||||| || ||||| ||||||| ||||    
T  10430097 tacaaaccctactgcattgtaatctgtctgaccggatcatgcaggttattatgaaacatacaaa 10430160  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 11772752 - 11772695
Alignment:
Q  130 tacaaattaagaatattacaaaccctactgcattgtactttgtctgaccggatcatgc 187  Q
    |||||||||||||||||||||| |||| |||||| |||||||||| || |||||||||    
T  11772752 tacaaattaagaatattacaaatcctaatgcattctactttgtctaacgggatcatgc 11772695  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 337
Target Start/End: Complemental strand, 10584506 - 10584471
Alignment:
Q  302 agtgagcagattatcatccacatagctaggcctttg 337  Q
    ||||||||||||||||||||||||||||||||||||    
T  10584506 agtgagcagattatcatccacatagctaggcctttg 10584471  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 10134745 - 10134711
Alignment:
Q  129 ttacaaattaagaatattacaaaccctactgcatt 163  Q
    |||||||||||||||||||||||||||||||||||    
T  10134745 ttacaaattaagaatattacaaaccctactgcatt 10134711  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 337
Target Start/End: Complemental strand, 10035637 - 10035589
Alignment:
Q  289 cttcaattcatcaagtgagcagattatcatccacatagctaggcctttg 337  Q
    ||||||||||  || ||||| ||||||||||||||||||||||||||||    
T  10035637 cttcaattcacgaaatgagctgattatcatccacatagctaggcctttg 10035589  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 10093215 - 10093176
Alignment:
Q  138 aagaatattacaaaccctactgcattgtactttgtctgac 177  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  10093215 aagaatattacaaaccctactgcattgtactctgtatgac 10093176  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 10200097 - 10200058
Alignment:
Q  138 aagaatattacaaaccctactgcattgtactttgtctgac 177  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  10200097 aagaatattacaaaccctactgcattgtactctgtatgac 10200058  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 10130671 - 10130614
Alignment:
Q  128 gttacaaattaagaatattacaaaccctactgcattgtactttgtctgaccggatcat 185  Q
    |||||||||||  |||||| ||||||||||  ||||||| ||||||||||| ||||||    
T  10130671 gttacaaattataaatattgcaaaccctacaacattgtattttgtctgaccagatcat 10130614  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 163
Target Start/End: Complemental strand, 10130879 - 10130846
Alignment:
Q  130 tacaaattaagaatattacaaaccctactgcatt 163  Q
    |||||||||||||||||||||||||||| |||||    
T  10130879 tacaaattaagaatattacaaaccctaccgcatt 10130846  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 163
Target Start/End: Original strand, 10372136 - 10372169
Alignment:
Q  130 tacaaattaagaatattacaaaccctactgcatt 163  Q
    |||||||||||||||||||||||||||| |||||    
T  10372136 tacaaattaagaatattacaaaccctaccgcatt 10372169  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 10372344 - 10372401
Alignment:
Q  128 gttacaaattaagaatattacaaaccctactgcattgtactttgtctgaccggatcat 185  Q
    |||||||||||  |||||| ||||||||||  ||||||| ||||||||||| ||||||    
T  10372344 gttacaaattataaatattgcaaaccctacaacattgtattttgtctgaccagatcat 10372401  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 156
Target Start/End: Complemental strand, 10584643 - 10584614
Alignment:
Q  127 tgttacaaattaagaatattacaaacccta 156  Q
    ||||||||||||||||||||||||||||||    
T  10584643 tgttacaaattaagaatattacaaacccta 10584614  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 337
Target Start/End: Complemental strand, 10130562 - 10130514
Alignment:
Q  289 cttcaattcatcaagtgagcagattatcatccacatagctaggcctttg 337  Q
    |||||||||| ||| |||||  |||||||||||||||||| ||||||||    
T  10130562 cttcaattcaccaaatgagctaattatcatccacatagctgggcctttg 10130514  T

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Target: scaffold0083 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 53857 - 53996
Alignment:
Q  17 atataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatacgagcattcatttaaaattacaaattaagaatcacgtcgc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  53857 atataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatatgagcattcatttaaaattacaaattaagaatcacgttgc 53956  T
Q  117 nnnnnnnnnntgttacaaattaagaatattacaaacccta 156  Q
              ||||||||||||||||||||||||||||||    
T  53957 aaacaaaaaatgttacaaattaagaatattacaaacccta 53996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 230 - 337
Target Start/End: Original strand, 54065 - 54172
Alignment:
Q  230 gcaatcaatggaagccgctgagtcttcaatttgtcataaaaaatcaaagaagcagttttcttcaattcatcaagtgagcagattatcatccacatagcta 329  Q
    |||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54065 gcaatcaatggatgccgctgagtcttcaattcctcataaaaaatcaaagaagcagttttcttcaattcatcaagtgagcagattatcatccacatagcta 54164  T
Q  330 ggcctttg 337  Q
    ||||||||    
T  54165 ggcctttg 54172  T

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