View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1508_high_22 (Length: 292)
Name: NF1508_high_22
Description: NF1508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1508_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 43997251 - 43996978
Alignment:
| Q |
1 |
caagatacttaagaaacctatgcaactcaagatattgaagcatgagtcatccatgaaagccaaccaacttaggatactcagactaatgtaagtcaaatag |
100 |
Q |
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| T |
43997251 |
caagatacttaagaaacctatgcagctcaagatattgaagcatgagtcatccatgaaacccaaccaacttaggatactcaggctaatgtaagtcaaatag |
43997152 |
T |
|
| Q |
101 |
gcaagtcaagaaaagggaaagataatgtaattgtgccaccagaaagaaaaacagcaataagaagggccaaaagcagtagagttcatattacaattaatga |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43997151 |
gcaagtcaagaaaagggaaagataaggtaattgtgccaccagaaataaaaacagcaataagaagggccaaaagcagtagagttcatattacaattaatga |
43997052 |
T |
|
| Q |
201 |
aggccgcacttgattttgattaatccagtgaatatagtaatttagattac-aatatgggtgaaattggtggttc |
273 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43997051 |
aggccgcacttgattttgattaatccactgaatatagtaatttagattacaaatatgggtgaaattggtggttc |
43996978 |
T |
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