View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1508_high_27 (Length: 252)
Name: NF1508_high_27
Description: NF1508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1508_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 8336816 - 8336591
Alignment:
| Q |
11 |
atgaagggaaaaaacttcaagtcaatttcactatgaaagatataaggtttagttacactttagttatcatattgcaatacttattaccttataatttttt |
110 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8336816 |
atgaagggaaaaagcttcaagtcaatttcactatgaaagatataaggtttagttacactttagttatcatattgcaatacttattaccttataatttttt |
8336717 |
T |
|
| Q |
111 |
ccttagagttttcaaccaacttaaattcctttcgtgttatgattcttagtgatattgttctgaactgtactctgtgggaggagtatgctgcaaagtttgt |
210 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8336716 |
ccttacagttttcaaccaacttaaattcctttcgtgttatgattcttagtgatattgttctgaactgtactctgtgggaggagtatgctgcaaagtttgt |
8336617 |
T |
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| Q |
211 |
tcaatataacagtgataggaaagagg |
236 |
Q |
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|||||||||||||||||||||||||| |
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| T |
8336616 |
tcaatataacagtgataggaaagagg |
8336591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 10233932 - 10233707
Alignment:
| Q |
11 |
atgaagggaaaaaacttcaagtcaatttcactatgaaagatataaggtttagttacactttagttatcatattgcaatacttattaccttataatttttt |
110 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10233932 |
atgaagggaaaaagcttcaagtcaatttcactatgaaagatataaggtttagttacactttagttatcatattgcaatacttattaccttataatttttt |
10233833 |
T |
|
| Q |
111 |
ccttagagttttcaaccaacttaaattcctttcgtgttatgattcttagtgatattgttctgaactgtactctgtgggaggagtatgctgcaaagtttgt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
10233832 |
ccttagagttttcaaccaacttaaattcctttcgtgttatgattctttgtgatattgttctgaactgtactctgtgggaggagtatgctccgaagtttgt |
10233733 |
T |
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| Q |
211 |
tcaatataacagtgataggaaagagg |
236 |
Q |
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|||||||||||||||||||||||||| |
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| T |
10233732 |
tcaatataacagtgataggaaagagg |
10233707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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