View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1508_high_29 (Length: 238)
Name: NF1508_high_29
Description: NF1508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1508_high_29 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 6838231 - 6837994
Alignment:
| Q |
1 |
ccaaatcatccttttgctctgcaagatattttagcttgcctagcaactctttgatcctagattcaaatggatttgtgatagctgaaagccagtatttaac |
100 |
Q |
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| T |
6838231 |
ccaaatcacccttttgctctgcaagatattttagcttgcctagcaactctttgatcctagattcaaatggattagtgatagctgaaagcaagtatttaac |
6838132 |
T |
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| Q |
101 |
ctttgatcccaacatatccttgctcttgagttttacatttgtatcaatctcatccaacaattgatctacttcatatacctcatgttttagagtatcaaac |
200 |
Q |
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| T |
6838131 |
ctttgatcccaacatatccttgctcttgagttttacatttgtatcaatctcatccaacaattgatctacttcatatacctcatgttttagattatcaaac |
6838032 |
T |
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| Q |
201 |
catttcttcacacgttggttatggtacttctttgtctc |
238 |
Q |
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| T |
6838031 |
cacttcttcacattttggttttggtacttctttgtctc |
6837994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 118 - 238
Target Start/End: Original strand, 8472359 - 8472479
Alignment:
| Q |
118 |
ccttgctcttgagttttacatttgtatcaatctcatccaacaattgatctacttcatatacctcatgttttagagtatcaaaccatttcttcacacgttg |
217 |
Q |
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| T |
8472359 |
ccttgctctttcgttgtacacttgtatcaaactcatccaacaattgatctacttcatatacctcatgttttagacgatcaagccaattcttaacattttg |
8472458 |
T |
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| Q |
218 |
gttatggtacttctttgtctc |
238 |
Q |
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| T |
8472459 |
gttctggtacttctttgtctc |
8472479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 5250875 - 5250954
Alignment:
| Q |
8 |
atccttttgctctgcaagatattttagcttgcctagcaactctttgatcctagattcaaatggatttgtgatagctgaaa |
87 |
Q |
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| T |
5250875 |
atccttttgctttgcaagaaattctagcttctctagcaattctttaatcctagattcaaatggattagtgaaagatgaaa |
5250954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 6448106 - 6448040
Alignment:
| Q |
7 |
catccttttgctctgcaagatattttagcttgcctagcaactctttgatcctagattcaaatggatt |
73 |
Q |
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| T |
6448106 |
catccttttgctctgcaagataatctagattctttagcaagtctttgatcctagattcaaatggatt |
6448040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 4388260 - 4388195
Alignment:
| Q |
8 |
atccttttgctctgcaagatattttagcttgcctagcaactctttgatcctagattcaaatggatt |
73 |
Q |
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| T |
4388260 |
atccttttgcttcgcaagaaattctaacttctctagcaattctttgatcctagattcaaatggatt |
4388195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 5268765 - 5268832
Alignment:
| Q |
11 |
cttttgctctgcaagatattttagcttgcctagcaactctttgatcctagattcaaatggatttgtga |
78 |
Q |
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| T |
5268765 |
cttttgttttgcaagaaattctagcttctctagcaattctttgatcctagactcaaatggattagtga |
5268832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 6572506 - 6572453
Alignment:
| Q |
138 |
tttgtatcaatctcatccaacaattgatctacttcatatacctcatgttttaga |
191 |
Q |
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| T |
6572506 |
tttgtagcaatctcatccaacaattgatctacttcatatacctcatgttttaga |
6572453 |
T |
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