View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1508_high_32 (Length: 225)
Name: NF1508_high_32
Description: NF1508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1508_high_32 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 39545773 - 39545990
Alignment:
| Q |
7 |
aaaggttcaatggcttgagatgcaactacaacaaccacgaaaagtggaaggggcaaacccgaaaccaccaagtccgtttccagatcaagcaaagctgatc |
106 |
Q |
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| T |
39545773 |
aaaggttcaatggcttgagatgcaactacaacaaccaagaaaagtggaaggggcaaacccgaaaccaccaagtccgtttccagatcaagcaaagctgatc |
39545872 |
T |
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| Q |
107 |
tccagttccccgttggccgcatcgctcgcttcctcaaagcaggtcgttattctcaacatgttggacatgtgactattgctaatggtggtgtattgcctaa |
206 |
Q |
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| T |
39545873 |
tccagttccccgttggccgcatcgttcgcttcctcaaagcaggtcgttattctcaacgtgttggacatgtgattattgctaatggtggtg-attgcctaa |
39545971 |
T |
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| Q |
207 |
cattcacaagaatttgtta |
225 |
Q |
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| T |
39545972 |
cattcaccagactttgtta |
39545990 |
T |
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Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 14 - 171
Target Start/End: Complemental strand, 37367992 - 37367835
Alignment:
| Q |
14 |
caatggcttgagatgcaactacaacaaccacgaaaagtggaaggggcaaacccgaaaccaccaagtccgtttccagatcaagcaaagctgatctccagtt |
113 |
Q |
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| T |
37367992 |
caatggcttcagatgcaactgcaacaaccaagaaaggtggaaggggcaaacccataaccaccaagtccgtttccagatcaagcaaagccggtctccagtt |
37367893 |
T |
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| Q |
114 |
ccccgttggccgcatcgctcgcttcctcaaagcaggtcgttattctcaacatgttgga |
171 |
Q |
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| T |
37367892 |
ccccgtcggccgcatcgctcgcttcctcaaagcaggtcgttattctcagcgtgttgga |
37367835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 37367584 - 37367529
Alignment:
| Q |
169 |
ggacatgtgactattgctaatggtggtgtattgcctaacattcacaagaatttgtt |
224 |
Q |
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| T |
37367584 |
ggacatgtgactattgctaatggtggtgttttgcctaacattcaccagactttgtt |
37367529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 34614900 - 34614941
Alignment:
| Q |
105 |
tctccagttccccgttggccgcatcgctcgcttcctcaaagc |
146 |
Q |
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| T |
34614900 |
tctccagttccccgttggccgtatcgctcgtttcctcaaagc |
34614941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 34622376 - 34622428
Alignment:
| Q |
94 |
agcaaagctgatctccagttccccgttggccgcatcgctcgcttcctcaaagc |
146 |
Q |
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| T |
34622376 |
agcaaagctggtcttcaattccccgttggccgtatcgctcgtttcctcaaagc |
34622428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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