View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1508_high_37 (Length: 206)
Name: NF1508_high_37
Description: NF1508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1508_high_37 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 6838640 - 6838435
Alignment:
| Q |
1 |
tagttcttgcctgttaatattttttgtagttgccgttggagtagttctaagtcttcgctatttgctgcagaatcaaacttcccaatgattattttggtaa |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6838640 |
tagttcttggctgttaatattttttgtagttgccgttggagtagttctaagtcttcgctatttgctgcagaatcaaacttcccaatgattattttggtaa |
6838541 |
T |
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| Q |
101 |
gtccaataacatcaaaatacttagatacatggacccaaactttaatctcaaacttctcttgtattctgcaatcattgtagacaagctgagcaagggtggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6838540 |
gtccaataacatcaaaatacttagatacatggacccaagctttaatctcaaacttctcttgtattctgcaatcattgtagacaagctgagcaagggtggt |
6838441 |
T |
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| Q |
201 |
ctttcc |
206 |
Q |
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|||||| |
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| T |
6838440 |
ctttcc |
6838435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 8471851 - 8472053
Alignment:
| Q |
1 |
tagttcttgcctgttaatattttttgtagttgccgttggagtagttctaagtcttcgctatttgctgcagaatcaaacttcccaatgattattttggtaa |
100 |
Q |
| |
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||||||||||| ||||||||| ||| |||||||||||||||| || |||||||| |||||||| | ||||||||| || | || ||||||||||||| |
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| T |
8471851 |
tagttcttgcccattaatatttcttgcagttgccgttggagtatatccaagtcttcactatttgcagaagaatcaaattttctaagaattattttggtaa |
8471950 |
T |
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| Q |
101 |
gtccaataacatcaaaatacttagatacatggacccaaactttaatctcaaacttctcttgtattctgcaatcattgtagacaagctgagcaagggtggt |
200 |
Q |
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| T |
8471951 |
gtgcaataacatcaaaatactcagatacatggacccaaactttaagttcaaactgcttgtccatcctctggtcattgtagacaagctgagcaagggtggt |
8472050 |
T |
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| Q |
201 |
ctt |
203 |
Q |
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||| |
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| T |
8472051 |
ctt |
8472053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 172 - 203
Target Start/End: Complemental strand, 6572866 - 6572835
Alignment:
| Q |
172 |
tcattgtagacaagctgagcaagggtggtctt |
203 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
6572866 |
tcattgtagacaagctgagcaagggtggtctt |
6572835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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