View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1508_high_8 (Length: 497)

Name: NF1508_high_8
Description: NF1508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1508_high_8
NF1508_high_8
[»] chr6 (7 HSPs)
chr6 (1-482)||(7993180-7993661)
chr6 (129-263)||(6417164-6417298)
chr6 (305-340)||(6437159-6437194)
chr6 (297-360)||(19633346-19633409)
chr6 (297-359)||(10578796-10578858)
chr6 (297-349)||(6433088-6433140)
chr6 (55-91)||(8913442-8913478)
[»] chr8 (1 HSPs)
chr8 (298-364)||(32152209-32152275)
[»] chr4 (6 HSPs)
chr4 (298-363)||(1547447-1547512)
chr4 (298-359)||(1552275-1552336)
chr4 (298-340)||(2460600-2460642)
chr4 (298-347)||(6007668-6007717)
chr4 (298-340)||(2367690-2367732)
chr4 (298-347)||(2486310-2486359)
[»] chr7 (4 HSPs)
chr7 (129-251)||(10615785-10615907)
chr7 (314-360)||(10168806-10168852)
chr7 (314-360)||(10176331-10176377)
chr7 (314-360)||(15091349-15091395)
[»] chr1 (2 HSPs)
chr1 (298-340)||(15837977-15838019)
chr1 (316-361)||(33161454-33161499)
[»] chr3 (2 HSPs)
chr3 (297-361)||(51763145-51763209)
chr3 (298-340)||(51112973-51113015)
[»] chr5 (3 HSPs)
chr5 (297-363)||(17205958-17206024)
chr5 (298-340)||(32268773-32268815)
chr5 (302-347)||(12846943-12846988)


Alignment Details
Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 7993661 - 7993180
Alignment:
Q  1 agcaaagggaaacagttggcaatgaataacaggccgcccttaccaagaaaagtattggaacaattgagagaggtcaaagttttaatgttttgcgcaaatg 100  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||    
T  7993661 agcaaagggaaacaattggcaatgagtaacaggccgcccttaccaagaaaagtattggaacaattgagagaggtcaaaattgtaatgttttgggcaaatg 7993562  T
Q  101 ctcgcagaccatagccgggaaagatgccttggtcggagatattaagggatgtgatgttcaatgatgggaaagtagagatttcccggagaaccttgtcaag 200  Q
    |||||| ||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  7993561 ctcgcaaaccataggcgggaaagttgcattggtcggagatattaagggatgtgatgttcaatgatgggaaagtagagatttcccgcagaaacttgtcaag 7993462  T
Q  201 gtcacaacggtagttcgagaggttgagggagttaaggttagtgaatcttttgaataggcgacatagaaaagtccgcgatgcatcgtggaaagtgtatgag 300  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  7993461 gtcacaatggtagttcgagaggttgagggagttaaggttagtgaatctttcgaatatgcgacatagaaaagtccgcgatgcatcgtagaaagtgtatgag 7993362  T
Q  301 aatcggagacggctggtgatggagaggaactgtttggagatgagggataaagaattcaagtagaagttgttgcgactgttgtggtcgtagttgggtatat 400  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||  ||||||||||||||||||||| |||||||||||||    
T  7993361 aatcggagacggctggtgatggagaggaactgtttggagacgagagataaagaattcaagtagtggttgttgcgactgttgtggtcatagttgggtatat 7993262  T
Q  401 gtgaatatgtagatgaagtcatttgttgtgaagatttgataagagaagttctcttctttttgatttgttgtgaaggattgag 482  Q
    ||||||||||||||||||  |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7993261 gtgaatatgtagatgaagaaattttttgtgaagatttgataagagaagttctcttccttttgatttgttgtgaaggattgag 7993180  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 263
Target Start/End: Original strand, 6417164 - 6417298
Alignment:
Q  129 ttggtcggagatattaagggatgtgatgttcaatgatgggaaagtagagatttcccggagaaccttgtcaaggtcacaacggtagttcgagaggttgagg 228  Q
    ||||| |||||||||||| |||||||||||||||||||| |||  ||||||||  |||||||     |||||||| | | |  ||   | ||||||||||    
T  6417164 ttggttggagatattaagtgatgtgatgttcaatgatggaaaacgagagattttacggagaagagcatcaaggtcgccatgaaagcgtgtgaggttgagg 6417263  T
Q  229 gagttaaggttagtgaatcttttgaataggcgaca 263  Q
    || |||||||| ||||||||||| || ||||||||    
T  6417264 gaattaaggtttgtgaatcttttaaagaggcgaca 6417298  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 340
Target Start/End: Original strand, 6437159 - 6437194
Alignment:
Q  305 ggagacggctggtgatggagaggaactgtttggaga 340  Q
    |||||||| |||||||||||||||||||||||||||    
T  6437159 ggagacggttggtgatggagaggaactgtttggaga 6437194  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 360
Target Start/End: Original strand, 19633346 - 19633409
Alignment:
Q  297 tgagaatcggagacggctggtgatggagaggaactgtttggagatgagggataaagaattcaag 360  Q
    ||||||| ||||||   |||| || ||||||||||||||||||| |||||||| ||||||||||    
T  19633346 tgagaataggagacaattggttattgagaggaactgtttggagacgagggatagagaattcaag 19633409  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 10578858 - 10578796
Alignment:
Q  297 tgagaatcggagacggctggtgatggagaggaactgtttggagatgagggataaagaattcaa 359  Q
    ||||||| |||||| | |||| ||||||||||| |||||||||| ||| |||| |||||||||    
T  10578858 tgagaataggagactgttggttatggagaggaattgtttggagacgagagatagagaattcaa 10578796  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 349
Target Start/End: Original strand, 6433088 - 6433140
Alignment:
Q  297 tgagaatcggagacggctggtgatggagaggaactgtttggagatgagggata 349  Q
    ||||||| ||||| || |||||| ||||||||||| |||||||| ||||||||    
T  6433088 tgagaataggagatggttggtgacggagaggaactatttggagacgagggata 6433140  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 8913478 - 8913442
Alignment:
Q  55 ttggaacaattgagagaggtcaaagttttaatgtttt 91  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  8913478 ttggaacaattgagagaggtcaaagttgtaatctttt 8913442  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 364
Target Start/End: Original strand, 32152209 - 32152275
Alignment:
Q  298 gagaatcggagacggctggtgatggagaggaactgtttggagatgagggataaagaattcaagtaga 364  Q
    ||||||||||||| | ||||||||||||||||||||||||||| |||||| |  |||||||||||||    
T  32152209 gagaatcggagactgttggtgatggagaggaactgtttggagacgagggagagtgaattcaagtaga 32152275  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 363
Target Start/End: Complemental strand, 1547512 - 1547447
Alignment:
Q  298 gagaatcggagacggctggtgatggagaggaactgtttggagatgagggataaagaattcaagtag 363  Q
    ||||||||||||||| |||||||||||||||| ||||||||||  |||||||| || |||||||||    
T  1547512 gagaatcggagacggttggtgatggagaggaattgtttggagacaagggataatgacttcaagtag 1547447  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 298 - 359
Target Start/End: Complemental strand, 1552336 - 1552275
Alignment:
Q  298 gagaatcggagacggctggtgatggagaggaactgtttggagatgagggataaagaattcaa 359  Q
    |||||||||||||||  |||||| ||| ||||||||||||||| |||||||||||| |||||    
T  1552336 gagaatcggagacggtcggtgatagaggggaactgtttggagacgagggataaagacttcaa 1552275  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 340
Target Start/End: Original strand, 2460600 - 2460642
Alignment:
Q  298 gagaatcggagacggctggtgatggagaggaactgtttggaga 340  Q
    ||||||||||||||  |||||||||||||||||||||||||||    
T  2460600 gagaatcggagacgattggtgatggagaggaactgtttggaga 2460642  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 347
Target Start/End: Original strand, 6007668 - 6007717
Alignment:
Q  298 gagaatcggagacggctggtgatggagaggaactgtttggagatgaggga 347  Q
    ||||||||||||| | |||||||||||||||||||||| |||| ||||||    
T  6007668 gagaatcggagactgttggtgatggagaggaactgtttcgagacgaggga 6007717  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 2367732 - 2367690
Alignment:
Q  298 gagaatcggagacggctggtgatggagaggaactgtttggaga 340  Q
    ||||||||||||||| ||||||||||||| || ||||||||||    
T  2367732 gagaatcggagacggttggtgatggagagaaattgtttggaga 2367690  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 347
Target Start/End: Original strand, 2486310 - 2486359
Alignment:
Q  298 gagaatcggagacggctggtgatggagaggaactgtttggagatgaggga 347  Q
    ||||||||||||||| |||||||||| || |||||||| |||| ||||||    
T  2486310 gagaatcggagacggttggtgatggacagaaactgttttgagacgaggga 2486359  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 129 - 251
Target Start/End: Original strand, 10615785 - 10615907
Alignment:
Q  129 ttggtcggagatattaagggatgtgatgttcaatgatgggaaagtagagatttcccggagaaccttgtcaaggtcacaacggtagttcgagaggttgagg 228  Q
    ||||| ||| |||||||| ||||||||||||||||||||||||  ||||||||  |||||||    |||||||||||   || ||   | ||||||||||    
T  10615785 ttggttggaaatattaagtgatgtgatgttcaatgatgggaaacgagagattttgcggagaagagcgtcaaggtcaccgtggaagcgtgtgaggttgagg 10615884  T
Q  229 gagttaaggttagtgaatctttt 251  Q
    || |||||||| |||||||||||    
T  10615885 gaattaaggtttgtgaatctttt 10615907  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 10168852 - 10168806
Alignment:
Q  314 tggtgatggagaggaactgtttggagatgagggataaagaattcaag 360  Q
    |||||||||||||||||||||||||||  ||||||| ||||||||||    
T  10168852 tggtgatggagaggaactgtttggagacaagggatagagaattcaag 10168806  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 10176377 - 10176331
Alignment:
Q  314 tggtgatggagaggaactgtttggagatgagggataaagaattcaag 360  Q
    |||||||||||||||||||||||||||  ||||||| ||||||||||    
T  10176377 tggtgatggagaggaactgtttggagacaagggatagagaattcaag 10176331  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 15091395 - 15091349
Alignment:
Q  314 tggtgatggagaggaactgtttggagatgagggataaagaattcaag 360  Q
    ||||||||||||||||||||||||||| |||||| | ||||||||||    
T  15091395 tggtgatggagaggaactgtttggagacgagggagagagaattcaag 15091349  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 15838019 - 15837977
Alignment:
Q  298 gagaatcggagacggctggtgatggagaggaactgtttggaga 340  Q
    ||||||||||||||| ||||||||||||| |||||||||||||    
T  15838019 gagaatcggagacggttggtgatggagagaaactgtttggaga 15837977  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 33161454 - 33161499
Alignment:
Q  316 gtgatggagaggaactgtttggagatgagggataaagaattcaagt 361  Q
    ||||||||||| ||||||||||||| |||||||| |||||||||||    
T  33161454 gtgatggagagaaactgtttggagacgagggatagagaattcaagt 33161499  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 51763209 - 51763145
Alignment:
Q  297 tgagaatcggagacggctggtgatggagaggaactgtttggagatgagggataaagaattcaagt 361  Q
    ||||||||||| ||||  |||||||||||||||||||||||| | || ||| | |||||||||||    
T  51763209 tgagaatcggaaacggtgggtgatggagaggaactgtttggaaacgatggagagagaattcaagt 51763145  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 51113015 - 51112973
Alignment:
Q  298 gagaatcggagacggctggtgatggagaggaactgtttggaga 340  Q
    ||||||||||||||| ||||||||||||||||| |||| ||||    
T  51113015 gagaatcggagacggttggtgatggagaggaaccgtttcgaga 51112973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 17205958 - 17206024
Alignment:
Q  297 tgagaatcggagacggctggtgatggagaggaactgtttggagatgagggataaagaattcaagtag 363  Q
    ||||||||||| || |  |||||| ||||| ||||||||||||| |||||||| |||||| ||||||    
T  17205958 tgagaatcggaaactgtcggtgatagagagtaactgtttggagacgagggatagagaatttaagtag 17206024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 340
Target Start/End: Original strand, 32268773 - 32268815
Alignment:
Q  298 gagaatcggagacggctggtgatggagaggaactgtttggaga 340  Q
    |||||||| |||||| ||||||||||||| |||||||||||||    
T  32268773 gagaatcgaagacggttggtgatggagagtaactgtttggaga 32268815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 12846943 - 12846988
Alignment:
Q  302 atcggagacggctggtgatggagaggaactgtttggagatgaggga 347  Q
    ||||||||||| ||||||||||||||||||| ||||| | ||||||    
T  12846943 atcggagacggttggtgatggagaggaactgcttggaaacgaggga 12846988  T

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