View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1508_low_11 (Length: 422)

Name: NF1508_low_11
Description: NF1508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1508_low_11
NF1508_low_11
[»] chr8 (2 HSPs)
chr8 (1-392)||(27972848-27973239)
chr8 (1-392)||(28030117-28030508)
[»] chr7 (3 HSPs)
chr7 (98-392)||(45726002-45726296)
chr7 (1-90)||(45745504-45745594)
chr7 (15-78)||(15648972-15649035)
[»] chr5 (4 HSPs)
chr5 (98-392)||(27657656-27657950)
chr5 (98-392)||(4883920-4884214)
chr5 (5-90)||(4885624-4885709)
chr5 (1-81)||(27652557-27652637)
[»] chr4 (5 HSPs)
chr4 (98-392)||(22114025-22114319)
chr4 (98-392)||(38719316-38719610)
chr4 (1-90)||(22102313-22102403)
chr4 (1-90)||(38717145-38717235)
chr4 (15-78)||(12633441-12633504)
[»] chr3 (2 HSPs)
chr3 (139-392)||(22601078-22601329)
chr3 (15-78)||(12104946-12105009)
[»] chr2 (1 HSPs)
chr2 (101-206)||(39079792-39079892)


Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 27973239 - 27972848
Alignment:
Q  1 taagttgttctgtgaaaggtgatggtgtggctatttgatgctgacgtgtcgctacttgctggtagggggtaaatgacttaatgtgaaaaggtgccttcca 100  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27973239 taagttgttctatgaaaggtgatgatgtggctatttgatgctgacgtgtcgctacttgctggcagggggtaaatgacttaatgtgaaaaggtgccttcca 27973140  T
Q  101 agatacaaaacaatactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttatcttccacacctcttcattgtt 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  27973139 agatacacaacaatactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttgtcttccacaccttttcattgtt 27973040  T
Q  201 tctatcatgacttaaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttcaaa 300  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27973039 tctatcttgacttaaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttcaaa 27972940  T
Q  301 ttatccttcttcctcaacagtccaaccttccagacatcttgatcaagtattccattaagcagccccaaagcctcagcctcatcaacccatac 392  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27972939 ttatcattcttcctcaacagtccaaccttccagacatcttgatcaagtattccattaagcagccccaaagcctcagcctcatcaacccatac 27972848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 28030508 - 28030117
Alignment:
Q  1 taagttgttctgtgaaaggtgatggtgtggctatttgatgctgacgtgtcgctacttgctggtagggggtaaatgacttaatgtgaaaaggtgccttcca 100  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28030508 taagttgttctatgaaaggtgatgatgtggctatttgatgctgacgtgtcgctacttgctggcagggggtaaatgacttaatgtgaaaaggtgccttcca 28030409  T
Q  101 agatacaaaacaatactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttatcttccacacctcttcattgtt 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||| || ||||||    
T  28030408 agatacacaacaatactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttgttttccactcctttttattgtt 28030309  T
Q  201 tctatcatgacttaaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttcaaa 300  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28030308 tctatcttgacttaaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttcaaa 28030209  T
Q  301 ttatccttcttcctcaacagtccaaccttccagacatcttgatcaagtattccattaagcagccccaaagcctcagcctcatcaacccatac 392  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||    
T  28030208 ttatctttcttcctcaacagtccaaccttccagacatcttgttcaatttttccattaagcagccccaaagcctcagcctcatcaacccatac 28030117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 98 - 392
Target Start/End: Complemental strand, 45726296 - 45726002
Alignment:
Q  98 ccaagatacaaaacaatactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttatcttccacacctcttcatt 197  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45726296 ccaagatacacaacaatactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttgtcttccacacctcttcatt 45726197  T
Q  198 gtttctatcatgacttaaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttc 297  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45726196 gtttctatcttgacttaaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttc 45726097  T
Q  298 aaattatccttcttcctcaacagtccaaccttccagacatcttgatcaagtattccattaagcagccccaaagcctcagcctcatcaacccatac 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  45726096 aaattatccttcttcctcaacagtccaaccttccagacatcttgatcaagtgtcccattaagcagccccaaagcctcagcctcatcaacccatac 45726002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 45745594 - 45745504
Alignment:
Q  1 taagttgttctgtgaaaggtgatggtgtggctatttgatgctgacgtgtcgctacttgctggtaggg-ggtaaatgacttaatgtgaaaag 90  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||| |||| |||||||||||||||||||||||    
T  45745594 taagttgttctgtgaaaggtgatgatgtggctatttgatgttgacgtgtcactacttgctggcagggaggtaaatgacttaatgtgaaaag 45745504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 15648972 - 15649035
Alignment:
Q  15 aaaggtgatggtgtggctatttgatgctgacgtgtcgctacttgctggtagggggtaaatgact 78  Q
    |||||||||| |||||||||||||||||||||||||  | |||||||| |||| ||||||||||    
T  15648972 aaaggtgatgatgtggctatttgatgctgacgtgtcaatccttgctggcagggcgtaaatgact 15649035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 98 - 392
Target Start/End: Original strand, 27657656 - 27657950
Alignment:
Q  98 ccaagatacaaaacaatactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttatcttccacacctcttcatt 197  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27657656 ccaagatacacaacaatactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttgtcttccacacctcttcatt 27657755  T
Q  198 gtttctatcatgacttaaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttc 297  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27657756 gtttctatcttgacttaaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttc 27657855  T
Q  298 aaattatccttcttcctcaacagtccaaccttccagacatcttgatcaagtattccattaagcagccccaaagcctcagcctcatcaacccatac 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  27657856 aaattatccttcttcctcaacagtccaaccttccagacatcttgatcaagtgtcccattaagcagccccaaagcctcagcctcatcaacccatac 27657950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 98 - 392
Target Start/End: Complemental strand, 4884214 - 4883920
Alignment:
Q  98 ccaagatacaaaacaatactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttatcttccacacctcttcatt 197  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||| |||    
T  4884214 ccaagatacacaacaatactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttgttttccacgcctctttatt 4884115  T
Q  198 gtttctatcatgacttaaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttc 297  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4884114 gtttctatcttgacttaaaatttgcattttctctatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttc 4884015  T
Q  298 aaattatccttcttcctcaacagtccaaccttccagacatcttgatcaagtattccattaagcagccccaaagcctcagcctcatcaacccatac 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||    
T  4884014 aaattatccttcttcctcaacagtccaaccttccagacatcttgatcaagtgtcccattaagcagccccaaagcctcagcctcaccaacccatac 4883920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 4885709 - 4885624
Alignment:
Q  5 ttgttctgtgaaaggtgatggtgtggctatttgatgctgacgtgtcgctacttgctggtagggggtaaatgacttaatgtgaaaag 90  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  4885709 ttgttctgtgaaaggtgatgatgtggctatttgatgctgacgtgtcgctacttactggcagggggtaaatgacttaatgtgaaaag 4885624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 27652557 - 27652637
Alignment:
Q  1 taagttgttctgtgaaaggtgatggtgtggctatttgatgctgacgtgtcgctacttgctggtagggggtaaatgacttaa 81  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  27652557 taagttgttctgtgaaaggtgatgatgtggctatttgatgttgacgtgtcactacttgctggcagggggtaaatgacttaa 27652637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 98 - 392
Target Start/End: Original strand, 22114025 - 22114319
Alignment:
Q  98 ccaagatacaaaacaatactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttatcttccacacctcttcatt 197  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22114025 ccaagatacacaacaatactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttgtcttccacacctcttcatt 22114124  T
Q  198 gtttctatcatgacttaaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttc 297  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22114125 gtttctatcttgacttaaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttc 22114224  T
Q  298 aaattatccttcttcctcaacagtccaaccttccagacatcttgatcaagtattccattaagcagccccaaagcctcagcctcatcaacccatac 392  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| | | |||||||||||||||||||||||||||||||||||||||||    
T  22114225 aaattatccttcttcctcaacagtccaaccttccagacatcttgttcaaatgtcccattaagcagccccaaagcctcagcctcatcaacccatac 22114319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 98 - 392
Target Start/End: Original strand, 38719316 - 38719610
Alignment:
Q  98 ccaagatacaaaacaatactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttatcttccacacctcttcatt 197  Q
    |||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  38719316 ccaagatacacaacaatacaatcatatacttcaataacttgacttcattcatcaatgcatcaattctatcgagcaactttgtcttccacacctcttcatt 38719415  T
Q  198 gtttctatcatgacttaaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttc 297  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38719416 gtttctatcttgacttaaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatctcttttcttc 38719515  T
Q  298 aaattatccttcttcctcaacagtccaaccttccagacatcttgatcaagtattccattaagcagccccaaagcctcagcctcatcaacccatac 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  38719516 aaattatccttcttcctcaacagtccaaccttccagacatcttgatcaagtgtcccattaagcagccccaaagcctcagcctcatcaacccatac 38719610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 22102313 - 22102403
Alignment:
Q  1 taagttgttctgtgaaaggtgatggtgtggctatttgatgctgacgtgtcgctacttgctggta-gggggtaaatgacttaatgtgaaaag 90  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||| | ||| |  |||| | ||||||||||||||||||||||||||    
T  22102313 taagttgttctgtgaaaggtgatgatgtggctatttgatgttgacgtggcactattctctggcaggggggtaaatgacttaatgtgaaaag 22102403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 38717145 - 38717235
Alignment:
Q  1 taagttgttctgtgaaaggtgatggtgtggctatttgatgctgacgtgtcgctacttgctggta-gggggtaaatgacttaatgtgaaaag 90  Q
    |||||||||| || |||| ||||| ||||||||||||||||||| ||||| || |||||||| | ||||||||||||||||||||||||||    
T  38717145 taagttgttccgttaaagttgatgatgtggctatttgatgctgatgtgtcacttcttgctgggaggggggtaaatgacttaatgtgaaaag 38717235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 12633504 - 12633441
Alignment:
Q  15 aaaggtgatggtgtggctatttgatgctgacgtgtcgctacttgctggtagggggtaaatgact 78  Q
    |||||||||| ||||||||||||||| |||||||||  | |||||||| | || ||||||||||    
T  12633504 aaaggtgatgatgtggctatttgatgttgacgtgtcaatgcttgctggcaaggagtaaatgact 12633441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 139 - 392
Target Start/End: Original strand, 22601078 - 22601329
Alignment:
Q  139 acttcattcatcaatgcatcaattctatccagcaactttatcttccacacctcttcattgtttctatcatgactt-aaaatttgcattttctccatcaaa 237  Q
    |||||| ||| ||||||||||||||||||||| | |  | |||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||    
T  22601078 acttcagtcagcaatgcatcaattctatccagtagcactgtcttccacacctcttcattgtttctatcttgactttaaaatttgtattttctccatcaaa 22601177  T
Q  238 ggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttcaaattatccttcttcctcaacagtccaaccttccagacat 337  Q
     ||   ||||||||||||   | || |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||    
T  22601178 tgtaatttccaaatatca---ctacaattttgccaataattacatgcatttcttttcttcaaattatccttcttcctcaacagtccagccttatagacat 22601274  T
Q  338 cttgatcaagtattccattaagcagccccaaagcctcagcctcatcaacccatac 392  Q
    ||||||||||| |||||||||||| ||||||||| || |||||||||||||||||    
T  22601275 cttgatcaagtgttccattaagcaaccccaaagcttcggcctcatcaacccatac 22601329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 12105009 - 12104946
Alignment:
Q  15 aaaggtgatggtgtggctatttgatgctgacgtgtcgctacttgctggtagggggtaaatgact 78  Q
    |||||||||| ||||||||||||||| |||||||||  | |||||| ||||||| |||||||||    
T  12105009 aaaggtgatgatgtggctatttgatgatgacgtgtcaatgcttgcttgtaggggttaaatgact 12104946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 39079792 - 39079892
Alignment:
Q  101 agatacaaaacaatactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttatcttccacacctcttcattgtt 200  Q
    ||||| ||||||||||||||||     ||||||||||||||||||||||||||||||||||||||| ||| | | || |||| || |||||  |||||||    
T  39079792 agatataaaacaatactatcat-----tcaataacttgacttcattcatcaatgcatcaattctattcagtagccttgtctttcaaacctccccattgtt 39079886  T
Q  201 tctatc 206  Q
    ||||||    
T  39079887 tctatc 39079892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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