View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1508_low_13 (Length: 401)
Name: NF1508_low_13
Description: NF1508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1508_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 11 - 385
Target Start/End: Original strand, 9166624 - 9166998
Alignment:
| Q |
11 |
cacagataagaaaataaagagcaaagttatttccacgaacacaatccttaacaagcataccaggatccaacaggaatggcaataaactccttctttccct |
110 |
Q |
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| T |
9166624 |
cacagataagaaaataaagagcaaagttatttccacgaacacaatccttaacaagcataccaggatccaacaggaatggcaataaactacttctttccct |
9166723 |
T |
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| Q |
111 |
tcataagcaggtaatatgtagctgattgtgaaccttctagatgaccctgaaattgggactgacctgtttcatcttccaagagccaaggcctgttcttgta |
210 |
Q |
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| T |
9166724 |
tcataagcaggtaatatgtagctgattgtgaaccttctagatgaccctgaaattgggactgacctgtttcatcttccaagaaccaaggcctgttcttgta |
9166823 |
T |
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| Q |
211 |
cttctcctatgtaatgcaacaacaaatcacacatgaacaaaaaagaaaagaatcgacctattacaacccacatgcaaatattcactttgttcatgacaaa |
310 |
Q |
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| T |
9166824 |
cttctcctatgtaatgcaacaacaaatcacacatgaacaaaaaagaaaagaatcgacctattacaacccacatgcaaatattcactttgttcatgacaaa |
9166923 |
T |
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| Q |
311 |
tgttatcatcttttcatgtccacagcaatcatcaactaaacaactcagtattttgacctaaccttaccaagacac |
385 |
Q |
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| T |
9166924 |
tattatcatcttttcatgtccacagcaatcatcaactaaacaactcagtattttgacctaaccttaccaagacac |
9166998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 42 - 384
Target Start/End: Original strand, 9155235 - 9155582
Alignment:
| Q |
42 |
tccacgaacacaatccttaacaagcataccaggatccaacaggaatggcaataaactccttctttcccttcataagcaggtaatatgtagctgattgtga |
141 |
Q |
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| T |
9155235 |
tccactaacacaatccttaacaagcataccaggaaccagcaggaatggcaacaaactccttcttttccttcattagcaggtaatacgtagctgattgtga |
9155334 |
T |
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| Q |
142 |
accttctagatgaccctgaaattgggactgacctgtttcatcttccaagagccaaggcctgttcttgtacttctcctatgtaatgcaacaacaaatcaca |
241 |
Q |
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| T |
9155335 |
accttcaagatgaccctgaaactgggactgacctgtttcatcctccaagagccaaggcctgttcttgtacttctcctatgcaatgcaacaccaaatcaca |
9155434 |
T |
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| Q |
242 |
catgaacaaaaaagaaa---agaatcgacctattacaacccacatgcaaatattcactttgttcatgacaa--atgttatcatcttttcatgtccacagc |
336 |
Q |
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| T |
9155435 |
catgaacaaaaaagaaaaacaaaattgacctattacaacccagaggcaataattcactttcttcatgacaaacacataatcctcttttcatgtccacaac |
9155534 |
T |
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| Q |
337 |
aatcatcaactaaacaactcagtattttgacctaaccttaccaagaca |
384 |
Q |
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| T |
9155535 |
aatcatcaattaaacaactcaatattttgacccaacattaccatgaca |
9155582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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