View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1508_low_16 (Length: 379)
Name: NF1508_low_16
Description: NF1508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1508_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 51731234 - 51731585
Alignment:
| Q |
18 |
aatcaagatcacgaggtagtcccactcctccaaacttggggttaccagtgaacttgagttcaactaccttagagttaaacctaatattctttaccaaatc |
117 |
Q |
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| T |
51731234 |
aatcaagatcatgaggtagtcccactcctccaaacttggggttcccagtgaacttgagttcaactaccttagagttaaacctaatattctttaccaaatc |
51731333 |
T |
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| Q |
118 |
aaagtgtttagcatatgatcgcaaataatctaacacttccgtgtgtgtaggaaaatcaggattatctctattaggccaagggaaatcagtgaattcataa |
217 |
Q |
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| T |
51731334 |
aaagtgtttagcatatgatcgcaaataatccaacacttccgtgtgtgtaggaaaatcaggattatctctattaggccaagggaaatcagtgaattcataa |
51731433 |
T |
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| Q |
218 |
tctctacgatgagattgaagctttgtagaattgtatgtacaatgcttccataccccaccaatggagtcagtggcttcaaatacaataggattgtggtgta |
317 |
Q |
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| T |
51731434 |
tctctacaatgagattgaagctttgtagaattgtacgtacaatgcttccataccccaccaatggagtcagtggcttcaaatacaataggattgtggtgta |
51731533 |
T |
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| Q |
318 |
atagttgttttgcaattgctatgccacttactccacctcctattattcctat |
369 |
Q |
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| T |
51731534 |
atagctgttttgcaattgctatgccacttactccacctcctattatgcctat |
51731585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 19192283 - 19192341
Alignment:
| Q |
272 |
ccaccaatggagtcagtggcttcaaatacaataggattgtggtgtaatagttgttttgc |
330 |
Q |
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| T |
19192283 |
ccaccaatggagttagtggcttcaaaaacaatagggttgtagtgtgatagttgttttgc |
19192341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 19054511 - 19054431
Alignment:
| Q |
272 |
ccaccaatggagtcagtggcttcaaatacaataggattgtggtgtaatagttgttttgcaattgctatgccacttactcca |
352 |
Q |
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|||||||| || |||||||||||||| |||||||| |||| |||| ||||||||||||| | |||| |||||| |||||| |
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| T |
19054511 |
ccaccaattgaatcagtggcttcaaaaacaatagggttgtagtgtgatagttgttttgctacggctaagccactaactcca |
19054431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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