View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1508_low_2 (Length: 656)

Name: NF1508_low_2
Description: NF1508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1508_low_2
NF1508_low_2
[»] chr6 (12 HSPs)
chr6 (32-571)||(33121005-33121543)
chr6 (334-479)||(32134018-32134164)
chr6 (585-645)||(33121817-33121877)
chr6 (322-457)||(5611112-5611247)
chr6 (334-456)||(2470347-2470469)
chr6 (394-454)||(27082309-27082369)
chr6 (401-452)||(8636806-8636857)
chr6 (334-449)||(19659610-19659724)
chr6 (401-459)||(31223188-31223247)
chr6 (316-449)||(227336-227471)
chr6 (352-455)||(17345855-17345958)
chr6 (345-383)||(31223253-31223291)
[»] chr2 (29 HSPs)
chr2 (334-483)||(42251575-42251725)
chr2 (335-443)||(40346717-40346825)
chr2 (359-449)||(41436328-41436418)
chr2 (337-449)||(18717853-18717965)
chr2 (352-459)||(31904236-31904342)
chr2 (334-420)||(23453377-23453463)
chr2 (307-459)||(13717171-13717322)
chr2 (337-449)||(40574141-40574253)
chr2 (337-483)||(13738393-13738540)
chr2 (353-455)||(14953021-14953123)
chr2 (335-460)||(17641166-17641291)
chr2 (362-454)||(4978775-4978867)
chr2 (362-454)||(4996683-4996775)
chr2 (362-449)||(28331277-28331364)
chr2 (333-387)||(36087408-36087462)
chr2 (373-454)||(6315885-6315966)
chr2 (345-439)||(7932897-7932991)
chr2 (353-455)||(18857431-18857533)
chr2 (373-427)||(43681305-43681359)
chr2 (333-449)||(4557574-4557691)
chr2 (335-427)||(1004771-1004862)
chr2 (359-443)||(9021482-9021566)
chr2 (353-449)||(29526315-29526411)
chr2 (364-486)||(8580477-8580600)
chr2 (354-449)||(27896466-27896561)
chr2 (353-387)||(7669194-7669228)
chr2 (334-387)||(3689614-3689667)
chr2 (352-449)||(38024194-38024290)
chr2 (354-454)||(43131774-43131874)
[»] chr5 (14 HSPs)
chr5 (344-449)||(27544592-27544697)
chr5 (332-483)||(22293952-22294104)
chr5 (332-454)||(41645032-41645152)
chr5 (316-427)||(30293800-30293911)
chr5 (335-454)||(36482050-36482168)
chr5 (334-482)||(11815880-11816029)
chr5 (337-454)||(30840596-30840712)
chr5 (405-455)||(41175393-41175443)
chr5 (312-449)||(6646291-6646428)
chr5 (359-459)||(8151815-8151918)
chr5 (353-439)||(7718502-7718589)
chr5 (332-383)||(34346951-34347002)
chr5 (398-439)||(26402066-26402107)
chr5 (359-427)||(27365991-27366059)
[»] chr8 (27 HSPs)
chr8 (334-449)||(1342325-1342439)
chr8 (332-454)||(10029160-10029282)
chr8 (353-481)||(29030422-29030554)
chr8 (346-456)||(32881109-32881219)
chr8 (335-483)||(41726864-41727013)
chr8 (333-452)||(44648932-44649051)
chr8 (333-459)||(11150916-11151041)
chr8 (335-459)||(35901412-35901536)
chr8 (335-449)||(18200677-18200791)
chr8 (352-484)||(18647474-18647606)
chr8 (330-483)||(31330968-31331123)
chr8 (333-439)||(6270144-6270249)
chr8 (333-455)||(13873694-13873816)
chr8 (354-443)||(42361529-42361618)
chr8 (333-449)||(600375-600491)
chr8 (353-454)||(23425277-23425382)
chr8 (334-444)||(27506943-27507051)
chr8 (345-483)||(43917555-43917694)
chr8 (334-439)||(3347506-3347610)
chr8 (337-459)||(20542380-20542502)
chr8 (373-444)||(17720212-17720283)
chr8 (337-419)||(2768559-2768641)
chr8 (401-459)||(23725687-23725745)
chr8 (316-449)||(40489853-40489985)
chr8 (353-444)||(3137408-3137499)
chr8 (352-454)||(547060-547166)
chr8 (344-380)||(33621438-33621474)
[»] chr4 (22 HSPs)
chr4 (333-459)||(27284065-27284191)
chr4 (307-448)||(22019607-22019748)
chr4 (335-455)||(12076424-12076544)
chr4 (335-454)||(20775070-20775189)
chr4 (333-481)||(13967814-13967964)
chr4 (334-454)||(16341097-16341217)
chr4 (333-449)||(12094961-12095077)
chr4 (334-456)||(27133545-27133667)
chr4 (333-449)||(31991452-31991568)
chr4 (337-459)||(2824814-2824936)
chr4 (373-480)||(19480508-19480616)
chr4 (335-427)||(28176801-28176892)
chr4 (352-457)||(7437842-7437947)
chr4 (346-419)||(22611904-22611977)
chr4 (355-424)||(31861444-31861513)
chr4 (353-450)||(21755875-21755974)
chr4 (333-433)||(31089779-31089878)
chr4 (344-439)||(55126783-55126879)
chr4 (333-387)||(31089510-31089564)
chr4 (373-459)||(39810737-39810822)
chr4 (405-459)||(52837333-52837387)
chr4 (353-413)||(37183077-37183137)
[»] chr1 (22 HSPs)
chr1 (336-454)||(30941466-30941584)
chr1 (334-483)||(33148126-33148275)
chr1 (333-449)||(26829495-26829611)
chr1 (309-449)||(8001717-8001857)
chr1 (344-419)||(48579929-48580004)
chr1 (333-459)||(46295865-46295991)
chr1 (306-439)||(11449073-11449206)
chr1 (346-454)||(30109224-30109333)
chr1 (344-432)||(10226467-10226555)
chr1 (334-449)||(5069500-5069614)
chr1 (352-459)||(17169283-17169390)
chr1 (312-439)||(27688492-27688619)
chr1 (334-456)||(13969094-13969216)
chr1 (335-443)||(50015771-50015879)
chr1 (401-452)||(34347572-34347623)
chr1 (405-454)||(3529109-3529158)
chr1 (353-454)||(5069701-5069802)
chr1 (385-438)||(40430824-40430877)
chr1 (316-440)||(34382610-34382733)
chr1 (334-384)||(39993446-39993496)
chr1 (355-403)||(763185-763233)
chr1 (401-482)||(38597446-38597531)
[»] chr3 (22 HSPs)
chr3 (333-449)||(38359050-38359166)
chr3 (316-449)||(50958863-50958996)
chr3 (353-482)||(48338782-48338912)
chr3 (345-458)||(53818820-53818932)
chr3 (345-449)||(55446736-55446839)
chr3 (335-480)||(44698189-44698335)
chr3 (359-456)||(29032408-29032505)
chr3 (364-449)||(31494030-31494115)
chr3 (316-459)||(6785771-6785915)
chr3 (344-467)||(11676741-11676865)
chr3 (333-466)||(28709560-28709693)
chr3 (353-449)||(47334863-47334959)
chr3 (334-441)||(4020109-4020216)
chr3 (334-459)||(635700-635825)
chr3 (352-449)||(49261783-49261880)
chr3 (346-418)||(8326171-8326243)
chr3 (354-454)||(34145920-34146019)
chr3 (334-482)||(1711919-1712068)
chr3 (373-449)||(4128727-4128803)
chr3 (352-482)||(49543174-49543305)
chr3 (353-454)||(25319461-25319562)
chr3 (359-391)||(31904734-31904766)
[»] chr7 (24 HSPs)
chr7 (335-454)||(1309720-1309839)
chr7 (309-439)||(8896568-8896698)
chr7 (346-449)||(43626350-43626453)
chr7 (346-482)||(23142660-23142797)
chr7 (332-477)||(37928274-37928420)
chr7 (359-481)||(16979912-16980035)
chr7 (354-455)||(31487725-31487826)
chr7 (359-452)||(34993148-34993241)
chr7 (353-427)||(31850762-31850836)
chr7 (354-439)||(8746149-8746234)
chr7 (337-455)||(16685728-16685848)
chr7 (337-455)||(17659964-17660084)
chr7 (375-484)||(30027931-30028041)
chr7 (312-449)||(43118809-43118946)
chr7 (333-388)||(34993092-34993147)
chr7 (345-387)||(1554025-1554067)
chr7 (337-481)||(19676965-19677110)
chr7 (335-444)||(25530541-25530650)
chr7 (399-449)||(1521261-1521311)
chr7 (353-483)||(12810161-12810291)
chr7 (335-449)||(42888306-42888420)
chr7 (405-454)||(22931924-22931973)
chr7 (356-449)||(27235256-27235349)
chr7 (373-437)||(23080659-23080723)
[»] scaffold0079 (1 HSPs)
scaffold0079 (334-454)||(51644-51764)
[»] scaffold0036 (1 HSPs)
scaffold0036 (316-419)||(36565-36668)
[»] scaffold0002 (1 HSPs)
scaffold0002 (332-482)||(120638-120789)
[»] scaffold0204 (1 HSPs)
scaffold0204 (353-458)||(15380-15485)


Alignment Details
Target: chr6 (Bit Score: 464; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 32 - 571
Target Start/End: Original strand, 33121005 - 33121543
Alignment:
Q  32 atgtataccccatcccttgatgaaaaggccacacatcccaataggttcaaatatattcaaccgttgaagcttttgttctgtctgaatctgaatctccatc 131  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  33121005 atgtataccccatcccttgatgaaaaggc-acacatcccaataggttcaaatatattcaaccgttgaagcttttgttctgtctgaatctgaatctccaaa 33121103  T
Q  132 tgtcccaatagtatgtgtaacaagaattatcgttatgctttacctaaaatgggatcttagattggattagttatcattaataaactaattgatttcaatt 231  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33121104 tgtcccaacagtatgtgtaacaagaattattgttatgctttacctaaaattggatcttagattggattagttatcattaataaactaattgatttcaatt 33121203  T
Q  232 aaaatcaaattggatgtaatctcaacgtcttgaagctatgatgcagtgttttcgaaactacttatactatattttgagttttgttaaccagtgcctttaa 331  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33121204 aaaatcaaattggatgtaatctcaacgtcttgaagctatgatgcggtgttttcgaaactacttatactatattttgggttttgttaaccagtgcctttaa 33121303  T
Q  332 agcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaattta 431  Q
    || |||||||| | ||| ||||||||||| |||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33121304 agtaatggttaagaaattttcaaataaaatttttgtcttgaaaatataagatgttattttttatcaaacaatgattacacaactttttcatgaaaattta 33121403  T
Q  432 cttattttggatgtttaatcaataccctagaacactagttagcattctcctactattttctactatctaattaagaaaactaatcatttctctaaataga 531  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33121404 cttattttttatgtttaatcaataccctagaacactagttagcattctcctactattttctactatctaattaagaaaactaatcatttctctaaataga 33121503  T
Q  532 aaccttgatatcgagattgttggccagtaatattttggta 571  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33121504 aaccttgatatcgagattgttggccagtaatattttggta 33121543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 334 - 479
Target Start/End: Complemental strand, 32134164 - 32134018
Alignment:
Q  334 caatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttact 433  Q
    |||| |||| ||||||| |||||| ||||||||| ||   |||||||||||||||||| ||||||  ||||||||||||||||||||| ||||| |||||    
T  32134164 caatagttaaggaatctacaaatagaaattttgttttgagaatataagatgttattttttatcaagtaatgattacacaactttttcaagaaaacttact 32134065  T
Q  434 tattttggatgtttaatcaataccc-tagaacactagttagcattct 479  Q
    |||||| |||| |||| |||| ||| |||  ||||||||||||||||    
T  32134064 tattttagatgcttaaccaatgcccttagggcactagttagcattct 32134018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 585 - 645
Target Start/End: Original strand, 33121817 - 33121877
Alignment:
Q  585 acaaatattttggtattgttaaaagtgatataaatgcatatcatcattatattagtttcat 645  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33121817 acaaatattttggtattgttaaaagtgatataaatgcatatcatcattatattagtttcat 33121877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 322 - 457
Target Start/End: Original strand, 5611112 - 5611247
Alignment:
Q  322 gtgcctttaaagcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttca 421  Q
    |||| ||||| | ||| |||| |||||||  ||||| ||||||||||||||||||||||||||||| |||  |||||| ||| |||| ||||||| ||||    
T  5611112 gtgcttttaacgaaattgttaaggaatctataaatagaaattttgtcttagaaatataagatgttacttttaatcaaataataattatacaacttattca 5611211  T
Q  422 tgaaaatttacttattttggatgtttaatcaatacc 457  Q
    | |||| |||||| |||||||||||||| |||||||    
T  5611212 taaaaacttacttgttttggatgtttaaccaatacc 5611247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 334 - 456
Target Start/End: Complemental strand, 2470469 - 2470347
Alignment:
Q  334 caatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttact 433  Q
    ||||||||| ||||||  |||||| ||| |||||||| |||||||||||| |||||||   ||||  |||||||| ||||||||||||| |||| ||||     
T  2470469 caatggttaaggaatcaccaaatagaaagtttgtctttgaaatataagatattatttttgttcaagtaatgattatacaactttttcataaaaacttacc 2470370  T
Q  434 tattttggatgtttaatcaatac 456  Q
    |||||| |||| |||| ||||||    
T  2470369 tattttagatgcttaaccaatac 2470347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 394 - 454
Target Start/End: Complemental strand, 27082369 - 27082309
Alignment:
Q  394 atcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatcaat 454  Q
    |||||| ||| |||||||||||||||||||||||||||||| |||||| ||||||| ||||    
T  27082369 atcaaataatcattacacaactttttcatgaaaatttacttgttttggttgtttaaccaat 27082309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 401 - 452
Target Start/End: Original strand, 8636806 - 8636857
Alignment:
Q  401 aatgattacacaactttttcatgaaaatttacttattttggatgtttaatca 452  Q
    |||||||||| |||||||||||||||| |||||||||||| ||| |||||||    
T  8636806 aatgattacataactttttcatgaaaacttacttattttgtatgcttaatca 8636857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 334 - 449
Target Start/End: Original strand, 19659610 - 19659724
Alignment:
Q  334 caatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttact 433  Q
    ||||||| | ||||||| |||| | ||||||||| | | |||||| |||| |||| ||  |||||  ||||||||||||||||||| || |||| |||||    
T  19659610 caatggtcaaggaatctacaaaaataaattttgtttga-aaatatgagatattatatttgatcaactaatgattacacaacttttttataaaaacttact 19659708  T
Q  434 tattttggatgtttaa 449  Q
    |||||| |||||||||    
T  19659709 tattttagatgtttaa 19659724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 401 - 459
Target Start/End: Complemental strand, 31223247 - 31223188
Alignment:
Q  401 aatgattacacaacttttt-catgaaaatttacttattttggatgtttaatcaataccct 459  Q
    ||||||||||||||||||| |||||||| |||||| |||||||||||||| |||| ||||    
T  31223247 aatgattacacaacttttttcatgaaaacttacttgttttggatgtttaaccaatgccct 31223188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 449
Target Start/End: Complemental strand, 227471 - 227336
Alignment:
Q  316 taaccagtgcctttaaagcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctat-caaacaatgattacacaa- 413  Q
    ||||||||| | |||  |||||||||| |||||||  ||||| ||||||| | ||  ||||||||||||||| |||  ||  |||||||||||||||||     
T  227471 taaccagtgtccttagggcaatggttaaggaatctataaatagaaatttttttttgaaaatataagatgttacttttgataaaaacaatgattacacaat 227372  T
Q  414 ctttttcatgaaaatttacttattttggatgtttaa 449  Q
     |||||||| |||  |||||| ||||||||| ||||    
T  227371 ttttttcataaaatcttacttcttttggatgcttaa 227336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 455
Target Start/End: Original strand, 17345855 - 17345958
Alignment:
Q  352 caaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatc 451  Q
    |||||||||||||||| ||| |||||||| |||||| |||  |||||  |  ||||||| ||||||||||  |||||||| || ||||| ||| |||| |    
T  17345855 caaataaaaattttgttttaaaaatataaaatgttacttttgatcaagtagcgattacataactttttcactaaaatttatttgttttgaatgcttaacc 17345954  T
Q  452 aata 455  Q
    ||||    
T  17345955 aata 17345958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 345 - 383
Target Start/End: Complemental strand, 31223291 - 31223253
Alignment:
Q  345 gaatcttcaaataaaaattttgtcttagaaatataagat 383  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  31223291 gaatctacaaataaaaattttgtcttggaaatataagat 31223253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 8e-32; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 334 - 483
Target Start/End: Complemental strand, 42251725 - 42251575
Alignment:
Q  334 caatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttact 433  Q
    ||||||||| |||||||  || |||||| ||| |||||||||||||| |||||||||| |||||  |||||||||||||||||||||||| ||| |||||    
T  42251725 caatggttaaggaatctctaagtaaaaaatttatcttagaaatataacatgttattttttatcattcaatgattacacaactttttcatgtaaacttact 42251626  T
Q  434 tattttggatgtttaatcaataccctaga-acactagttagcattctccta 483  Q
    | ||||||||| |||| |||| |||| || ||||||||||||||| |||||    
T  42251625 tgttttggatgcttaaccaatgcccttgagacactagttagcattttccta 42251575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 335 - 443
Target Start/End: Complemental strand, 40346825 - 40346717
Alignment:
Q  335 aatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttactt 434  Q
    |||||||| ||||||| || ||| ||||||||| ||  |||||||||||||||||||  |||||| ||||||| |||||||||||||| |||| ||||||    
T  40346825 aatggttaaggaatctacatatagaaattttgtattgaaaatataagatgttatttttgatcaaataatgattgcacaactttttcataaaaacttactt 40346726  T
Q  435 attttggat 443  Q
    |||||||||    
T  40346725 attttggat 40346717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 359 - 449
Target Start/End: Complemental strand, 41436418 - 41436328
Alignment:
Q  359 aaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaa 449  Q
    ||||||| |||||||| ||||||||||||||||  || ||| ||||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  41436418 aaattttatcttagaagtataagatgttatttttgataaaataatgattacacaactttttcatgaaaacttacttgttttggatgcttaa 41436328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 337 - 449
Target Start/End: Complemental strand, 18717965 - 18717853
Alignment:
Q  337 tggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttat 436  Q
    |||||| ||||| | |||||| ||||||| | ||| ||||||||||||||| |||  |||||  ||||||||||||||||||||||||||||||  || |    
T  18717965 tggttaaggaatttacaaatagaaattttattttaaaaatataagatgttacttttgatcaagtaatgattacacaactttttcatgaaaatttgtttgt 18717866  T
Q  437 tttggatgtttaa 449  Q
    |||||||| ||||    
T  18717865 tttggatgcttaa 18717853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 352 - 459
Target Start/End: Original strand, 31904236 - 31904342
Alignment:
Q  352 caaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatc 451  Q
    |||||||| ||||| ||||| |||||||| ||||||||||  |||||  ||||||||||||| |||||||| |||||||||||||||| |||| |||| |    
T  31904236 caaataaatattttatcttaaaaatataaaatgttatttttaatcaagtaatgattacacaattttttcat-aaaatttacttattttagatgattaacc 31904334  T
Q  452 aataccct 459  Q
    ||| ||||    
T  31904335 aatgccct 31904342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 334 - 420
Target Start/End: Complemental strand, 23453463 - 23453377
Alignment:
Q  334 caatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttc 420  Q
    |||| |||| ||||||| |||||||||||||||||||  ||||||||||||||| |||  |||||| || |||||||||||||||||    
T  23453463 caatagttaaggaatctacaaataaaaattttgtcttgaaaatataagatgttacttttgatcaaataaagattacacaactttttc 23453377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 307 - 459
Target Start/End: Complemental strand, 13717322 - 13717171
Alignment:
Q  307 gagttttgttaaccagtgcctttaaagcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgat 406  Q
    |||| ||||||||| ||||| | | |||||| |||| ||||| | |||||| ||||||||||||  |||||||| |||||||||| ||  ||  ||| ||    
T  13717322 gagtcttgttaaccggtgccctcagagcaatagttaaggaatatacaaatagaaattttgtcttgaaaatataaaatgttatttt-taataagtaataat 13717224  T
Q  407 tacacaactttttcatgaaaatttacttattttggatgtttaatcaataccct 459  Q
    |||| |||||||| ||||||| ||||||||||| |||| |||| || ||||||    
T  13717223 tacataactttttgatgaaaacttacttattttagatgcttaaccattaccct 13717171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 337 - 449
Target Start/End: Original strand, 40574141 - 40574253
Alignment:
Q  337 tggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttat 436  Q
    |||||| ||||||| |||||| |||||||||||| ||||||||| |||| | |||  ||  |  ||| |||||||||||||||||||||||| ||||| |    
T  40574141 tggttaaggaatctacaaatagaaattttgtcttggaaatataaaatgtaacttttgatagagtaataattacacaactttttcatgaaaatgtacttgt 40574240  T
Q  437 tttggatgtttaa 449  Q
    |||||||| ||||    
T  40574241 tttggatgcttaa 40574253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 337 - 483
Target Start/End: Original strand, 13738393 - 13738540
Alignment:
Q  337 tggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttat 436  Q
    |||||| |||||||  ||||||||||||||| ||  ||||||||||||||| ||   || ||  ||||||||||||| ||||| || |||| |||||| |    
T  13738393 tggttaaggaatctataaataaaaattttgttttgaaaatataagatgttacttctgataaagtaatgattacacaatttttttataaaaacttacttgt 13738492  T
Q  437 tttggatgtttaatcaata-ccctagaacactagttagcattctccta 483  Q
    |||||||| |||| ||||| || ||| |||||||||  ||||||||||    
T  13738493 tttggatgcttaaccaatatccttaggacactagttgccattctccta 13738540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 353 - 455
Target Start/End: Complemental strand, 14953123 - 14953021
Alignment:
Q  353 aaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatca 452  Q
    ||||||||||||||||||| |||||||| ||||||||||  ||| |  |||||||| |||| |||||  |  |||||||||||||||||||| |||| ||    
T  14953123 aaataaaaattttgtcttaaaaatataaaatgttatttttgatcgagtaatgattagacaatttttttttacaaatttacttattttggatgcttaacca 14953024  T
Q  453 ata 455  Q
    |||    
T  14953023 ata 14953021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 335 - 460
Target Start/End: Complemental strand, 17641291 - 17641166
Alignment:
Q  335 aatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttactt 434  Q
    |||||||| |||||||  ||||||||| ||||| || ||||||||| |||||| |||  || ||  ||| ||| ||||||||||  ||||||| ||||||    
T  17641291 aatggttaaggaatctataaataaaaactttgtttttgaaatataaaatgttacttttgataaagaaattattgcacaacttttcaatgaaaacttactt 17641192  T
Q  435 attttggatgtttaatcaatacccta 460  Q
    ||||| |||| ||||||| |||||||    
T  17641191 attttagatgcttaatcagtacccta 17641166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 362 - 454
Target Start/End: Original strand, 4978775 - 4978867
Alignment:
Q  362 ttttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatcaat 454  Q
    |||||||||  ||||||||||||||| |||  |||||  |||||||||||||| |||| || |||| ||| ||||||||||||||||| ||||    
T  4978775 ttttgtcttgaaaatataagatgttacttttgatcaagtaatgattacacaacatttttataaaaacttatttattttggatgtttaaccaat 4978867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 362 - 454
Target Start/End: Original strand, 4996683 - 4996775
Alignment:
Q  362 ttttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatcaat 454  Q
    |||||||||  ||||||||||||||| |||  |||||  |||||||||||||| |||| || |||| ||| ||||||||||||||||| ||||    
T  4996683 ttttgtcttgaaaatataagatgttacttttgatcaagtaatgattacacaacatttttataaaaacttatttattttggatgtttaaccaat 4996775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 362 - 449
Target Start/End: Original strand, 28331277 - 28331364
Alignment:
Q  362 ttttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaa 449  Q
    ||||||||| ||||||||| || |||||||  |||||  ||||||||||||||| |||||| |||| |||||||||||| ||| ||||    
T  28331277 ttttgtcttggaaatataaaatattatttttgatcaagtaatgattacacaactctttcataaaaacttacttattttgaatgcttaa 28331364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 333 - 387
Target Start/End: Complemental strand, 36087462 - 36087408
Alignment:
Q  333 gcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgtta 387  Q
    |||||||||| ||||||| |||||| ||||||| |||||||||||||||||||||    
T  36087462 gcaatggttaaggaatctacaaatagaaattttatcttagaaatataagatgtta 36087408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 373 - 454
Target Start/End: Complemental strand, 6315966 - 6315885
Alignment:
Q  373 aaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatcaat 454  Q
    |||||||||||||||||||  |||||  ||||||||||||| ||||| |  |||||||| || |||||||||||||| ||||    
T  6315966 aaatataagatgttatttttgatcaagtaatgattacacaatttttttacaaaaatttatttgttttggatgtttaaccaat 6315885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 439
Target Start/End: Original strand, 7932897 - 7932991
Alignment:
Q  345 gaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttatttt 439  Q
    |||||| |||||| ||||||||| |||||||| |||||| ||| |||  || ||  ||||||| |||||||||||| | |||| |||||||||||    
T  7932897 gaatctacaaatagaaattttgttttagaaatgtaagattttactttggataaagtaatgattgcacaactttttcgtaaaaacttacttatttt 7932991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 455
Target Start/End: Complemental strand, 18857533 - 18857431
Alignment:
Q  353 aaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatca 452  Q
    ||||||||| ||||||||| |||||| | ||||||| ||  || ||  ||| ||||||| |  ||||||||||||||||||| ||||| ||| |||||||    
T  18857533 aaataaaaagtttgtcttaaaaatatgatatgttatctttgataaagtaataattacacgatattttcatgaaaatttacttgttttgaatgcttaatca 18857434  T
Q  453 ata 455  Q
    |||    
T  18857433 ata 18857431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 427
Target Start/End: Original strand, 43681305 - 43681359
Alignment:
Q  373 aaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaa 427  Q
    ||||||||||||||||||| || |||| |||||||| ||||||||||||| ||||    
T  43681305 aaatataagatgttattttttaccaaataatgattatacaactttttcataaaaa 43681359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 333 - 449
Target Start/End: Complemental strand, 4557691 - 4557574
Alignment:
Q  333 gcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaac-tttttcatgaaaattta 431  Q
    ||||||||||  |||||| |||||| ||||||| |||| ||||||||||| ||||||||  ||  |  ||| ||||| |||| |||||||| |||| |||    
T  4557691 gcaatggttaaagaatctacaaatagaaattttatcttggaaatataagaagttatttttgattgagtaattattactcaacttttttcataaaaactta 4557592  T
Q  432 cttattttggatgtttaa 449  Q
    ||||| ||||||| ||||    
T  4557591 cttatcttggatgcttaa 4557574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 427
Target Start/End: Original strand, 1004771 - 1004862
Alignment:
Q  335 aatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaa 427  Q
    |||||||| ||||||| |||||| ||||||||||||  |||||||| || ||| |||  || |||  ||||||||||||||||||||| ||||    
T  1004771 aatggttaaggaatctacaaatagaaattttgtcttgaaaatataaaatattacttttgat-aaattatgattacacaactttttcataaaaa 1004862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 359 - 443
Target Start/End: Complemental strand, 9021566 - 9021482
Alignment:
Q  359 aaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggat 443  Q
    |||||||||||| ||||| ||||||||||||||  |  ||| ||||||||||| | |||||  |||||| || ||||||||||||    
T  9021566 aaattttgtcttggaaatgtaagatgttatttttgactaaataatgattacactatttttttgtgaaaactttcttattttggat 9021482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 353 - 449
Target Start/End: Original strand, 29526315 - 29526411
Alignment:
Q  353 aaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaa 449  Q
    ||||||||||||  ||||| |||||||| || |||||||  || ||  ||||||||||||| ||||| |||||||  ||||||||||  ||||||||    
T  29526315 aaataaaaatttaatcttaaaaatataaaatattatttttaataaagtaatgattacacaatttttttatgaaaacctacttattttaaatgtttaa 29526411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 486
Target Start/End: Complemental strand, 8580600 - 8580477
Alignment:
Q  364 ttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatcaataccc-taga 462  Q
    ||||||| |||||||||||||||| |||  || ||  ||| |||| |||  ||||||||||||| | ||||| |||||||| |||| |||| ||| |||     
T  8580600 ttgtcttggaaatataagatgttacttttgattaagtaataattagacacatttttcatgaaaactaacttactttggatgcttaaccaatgcccttagg 8580501  T
Q  463 acactagttagcattctcctacta 486  Q
     |||| ||||||||||||| ||||    
T  8580500 gcactggttagcattctccaacta 8580477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 449
Target Start/End: Complemental strand, 27896561 - 27896466
Alignment:
Q  354 aataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaa 449  Q
    |||| ||| ||||| ||||||||||||| ||||| |||  ||  |  ||| ||||||||||||||| || |||| ||||||||||||| |||||||    
T  27896561 aatagaaaatttgttttagaaatataagctgttacttttgatttagtaataattacacaactttttaattaaaacttacttattttggttgtttaa 27896466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 353 - 387
Target Start/End: Complemental strand, 7669228 - 7669194
Alignment:
Q  353 aaataaaaattttgtcttagaaatataagatgtta 387  Q
    ||||||||||||||||||| |||||||||||||||    
T  7669228 aaataaaaattttgtcttaaaaatataagatgtta 7669194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 387
Target Start/End: Original strand, 3689614 - 3689667
Alignment:
Q  334 caatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgtta 387  Q
    ||||||||| ||| ||| |||||| ||||||| |||| ||||||||||||||||    
T  3689614 caatggttaaggattctacaaatagaaattttatctttgaaatataagatgtta 3689667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 449
Target Start/End: Original strand, 38024194 - 38024290
Alignment:
Q  352 caaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaa 449  Q
    |||||| ||||||| ||||| ||||||||||| ||| |||  |||||| ||| |||||| ||||||||||| ||||    ||| ||||||||||||||    
T  38024194 caaatagaaattttatcttaaaaatataagatattacttt-gatcaaataataattacataactttttcattaaaacgggcttgttttggatgtttaa 38024290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 354 - 454
Target Start/End: Original strand, 43131774 - 43131874
Alignment:
Q  354 aataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatcaa 453  Q
    |||||||||||||||||| |||| |||| |  || |||  |||||  ||| ||||||| || |||| || |||| |||||| |||||| |||||||||||    
T  43131774 aataaaaattttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacctttttataaaaacttacttgttttggttgtttaatcaa 43131873  T
Q  454 t 454  Q
    |    
T  43131874 t 43131874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 8e-29; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 344 - 449
Target Start/End: Complemental strand, 27544697 - 27544592
Alignment:
Q  344 ggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggat 443  Q
    ||||||| |||||| ||||||| ||||  ||||||||||||||||||| |||||   |||||||||||||||||||||||||||||||||| ||||||||    
T  27544697 ggaatctacaaatagaaattttatcttgaaaatataagatgttattttttatcatgtaatgattacacaactttttcatgaaaatttacttgttttggat 27544598  T
Q  444 gtttaa 449  Q
    ||||||    
T  27544597 gtttaa 27544592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 332 - 483
Target Start/End: Complemental strand, 22294104 - 22293952
Alignment:
Q  332 agcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaattta 431  Q
    ||||||||||| ||||||| |||||| |||||||||||| |||||||||||| ||  |||  |||||| ||| ||| |||||||||||||| |||| |||    
T  22294104 agcaatggttaaggaatctacaaatagaaattttgtcttggaaatataagatattggttttgatcaaataattattgcacaactttttcataaaaactta 22294005  T
Q  432 cttattttggatgtttaatcaataccctag-aacactagttagcattctccta 483  Q
    ||| ||||| |||||||| ||||||||| |   |||| |||||||||||||||    
T  22294004 cttgttttgaatgtttaaccaatacccttgtggcactggttagcattctccta 22293952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 332 - 454
Target Start/End: Complemental strand, 41645152 - 41645032
Alignment:
Q  332 agcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaattta 431  Q
    |||| ||||||  ||||||  |||||||||||||||||   ||||||||||| ||||||| ||||||  ||||||||||||||  |||||||||||||||    
T  41645152 agcattggttaaagaatctataaataaaaattttgtctagaaaatataagatattattttttatcaagtaatgattacacaac--tttcatgaaaattta 41645055  T
Q  432 cttattttggatgtttaatcaat 454  Q
    |||||||| |||| |||| ||||    
T  41645054 cttattttagatgcttaagcaat 41645032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 316 - 427
Target Start/End: Original strand, 30293800 - 30293911
Alignment:
Q  316 taaccagtgcctttaaagcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaact 415  Q
    ||||||||||| ||| || | ||||||  |||||| |||||| ||||||||||||| ||||||||||||||| |||  |||||  |||||||||| || |    
T  30293800 taaccagtgcccttagagtattggttaaagaatctacaaatagaaattttgtcttaaaaatataagatgttacttttgatcaagtaatgattacataatt 30293899  T
Q  416 ttttcatgaaaa 427  Q
    ||||||||||||    
T  30293900 ttttcatgaaaa 30293911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 335 - 454
Target Start/End: Complemental strand, 36482168 - 36482050
Alignment:
Q  335 aatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttactt 434  Q
    ||||||||  |||||| |||||| ||||||||| ||  ||||||||||||||| |||  |||||| |||| |||||||||||||| ||||||| ||| ||    
T  36482168 aatggttaatgaatctacaaatagaaattttgttttgaaaatataagatgttacttttgatcaaataatgtttacacaacttttttatgaaaactta-tt 36482070  T
Q  435 attttggatgtttaatcaat 454  Q
    ||||| ||||||||| ||||    
T  36482069 attttagatgtttaaccaat 36482050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 334 - 482
Target Start/End: Complemental strand, 11816029 - 11815880
Alignment:
Q  334 caatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttact 433  Q
    |||||||||  ||||||  ||||| ||||||||||||  ||||||||||||||| |||  || ||  ||||||||||||  |||||||| |||| |||||    
T  11816029 caatggttaatgaatctaaaaatagaaattttgtcttgaaaatataagatgttacttttgataaagtaatgattacacatatttttcataaaaacttact 11815930  T
Q  434 tattttggatgtttaatcaataccc-tagaacactagttagcattctcct 482  Q
    | ||||  || |||||||| | ||| ||  ||||||||||||||||||||    
T  11815929 tgttttaaatatttaatcattgcccttaagacactagttagcattctcct 11815880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 337 - 454
Target Start/End: Original strand, 30840596 - 30840712
Alignment:
Q  337 tggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttat 436  Q
    |||||| ||||||| | || | ||| ||||||||  ||||||||||||||| |||  |||||  |||||||||||||||||||  |||||| |||||| |    
T  30840596 tggttaaggaatctactaacagaaaatttgtcttgaaaatataagatgttacttttgatcaagtaatgattacacaacttttt-ttgaaaacttacttgt 30840694  T
Q  437 tttggatgtttaatcaat 454  Q
    |||||||| |||||||||    
T  30840695 tttggatgcttaatcaat 30840712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 455
Target Start/End: Original strand, 41175393 - 41175443
Alignment:
Q  405 attacacaactttttcatgaaaatttacttattttggatgtttaatcaata 455  Q
    ||||||||| ||||||||||||| ||||||| ||||||||||||| |||||    
T  41175393 attacacaattttttcatgaaaacttacttaatttggatgtttaaccaata 41175443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 449
Target Start/End: Complemental strand, 6646428 - 6646291
Alignment:
Q  312 ttgttaaccagtgcctttaaagcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacac 411  Q
    ||||||||| ||||| ||| ||||||| |||   ||| | ||||||||| |||| | || ||||||||| |||||| |||  || |   |||||||||||    
T  6646428 ttgttaaccggtgcccttagagcaatgattaaataatatacaaataaaatttttatatttgaaatataatatgttacttttgataatgtaatgattacac 6646329  T
Q  412 aactttttcatgaaaatttacttattttggatgtttaa 449  Q
    || |||||||| || |||||||| |||| |||||||||    
T  6646328 aattttttcattaatatttacttgttttagatgtttaa 6646291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 359 - 459
Target Start/End: Original strand, 8151815 - 8151918
Alignment:
Q  359 aaattttgtcttagaaatataagatgttattttctatcaa--acaatgattacacaactttttcatgaaaa-tttacttattttggatgtttaatcaata 455  Q
    ||||||||| ||  ||||||||||||||| |||  |||||  | ||| |||| | |||||||| ||||||| ||||||||||||| || |||||||||||    
T  8151815 aaattttgttttgaaaatataagatgttacttttaatcaagtataataattatataacttttttatgaaaaatttacttattttgtatatttaatcaata 8151914  T
Q  456 ccct 459  Q
    ||||    
T  8151915 ccct 8151918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 439
Target Start/End: Complemental strand, 7718589 - 7718502
Alignment:
Q  353 aaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaa-ctttttcatgaaaatttacttatttt 439  Q
    ||||| ||||||| ||||| |||||||||||||||||||  || ||| ||| |||||||||  |||||||| |||| ||| |||||||    
T  7718589 aaatataaattttatcttaaaaatataagatgttatttttaatgaaataatcattacacaatttttttcataaaaacttatttatttt 7718502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 383
Target Start/End: Complemental strand, 34347002 - 34346951
Alignment:
Q  332 agcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagat 383  Q
    ||||||||||| ||||||| |||||||||| ||||||||  |||||||||||    
T  34347002 agcaatggttaaggaatctacaaataaaaaatttgtcttgaaaatataagat 34346951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 439
Target Start/End: Original strand, 26402066 - 26402107
Alignment:
Q  398 aacaatgattacacaactttttcatgaaaatttacttatttt 439  Q
    ||||||||||||||||||||||  |||||| |||||||||||    
T  26402066 aacaatgattacacaactttttattgaaaaattacttatttt 26402107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 427
Target Start/End: Original strand, 27365991 - 27366059
Alignment:
Q  359 aaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaa 427  Q
    ||||||| |||| |||||||||||| ||| |||  | |||| ||||||||| ||| |||||||||||||    
T  27365991 aaattttatcttggaaatataagatattactttagaccaaataatgattacgcaattttttcatgaaaa 27366059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 334 - 449
Target Start/End: Complemental strand, 1342439 - 1342325
Alignment:
Q  334 caatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttact 433  Q
    |||||||||| ||||||||||||| ||||||| |||| |||||||||||||||| |||  || ||||||||||||||||||||||| ||||||| |||||    
T  1342439 caatggttagagaatcttcaaatagaaattttatcttggaaatataagatgttacttttgat-aaacaatgattacacaacttttttatgaaaacttact 1342341  T
Q  434 tattttggatgtttaa 449  Q
    |||||| |||| ||||    
T  1342340 tattttagatgcttaa 1342325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 332 - 454
Target Start/End: Complemental strand, 10029282 - 10029160
Alignment:
Q  332 agcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaattta 431  Q
    ||||||||||| | ||||| |||||||||||||| |||| |||||||||||||||| |||  |||||  |||||||| ||||||||||||| ||||||||    
T  10029282 agcaatggttaagaaatctacaaataaaaattttatcttggaaatataagatgttacttttgatcaagtaatgattatacaactttttcataaaaattta 10029183  T
Q  432 cttattttggatgtttaatcaat 454  Q
    |||  |||||||| |||| ||||    
T  10029182 cttgatttggatgcttaaccaat 10029160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 353 - 481
Target Start/End: Complemental strand, 29030554 - 29030422
Alignment:
Q  353 aaataaaaattttgtcttagaaatataagatgttatt---ttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaa 449  Q
    ||||| |||||||||||| ||||||||| ||||||||   || ||||||| ||||||| ||||| ||||| || ||||||||||||||||  ||||||||    
T  29030554 aaatataaattttgtctttgaaatataacatgttattattttttatcaaataatgattgcacaatttttttataaaaatttacttattttaaatgtttaa 29030455  T
Q  450 tcaataccc-tagaacactagttagcattctcc 481  Q
    ||||||||| || |||| |||||||||||||||    
T  29030454 tcaatacccttataacattagttagcattctcc 29030422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 346 - 456
Target Start/End: Complemental strand, 32881219 - 32881109
Alignment:
Q  346 aatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgt 445  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||||| ||||||   ||||||||||||| ||||  | |||| |||||||||||||||||    
T  32881219 aatctacaaataaaaattttgtcttaaaaatataagatattattttttatcaagttatgattacacaacattttattaaaaacttacttattttggatgt 32881120  T
Q  446 ttaatcaatac 456  Q
    |||| ||||||    
T  32881119 ttaaccaatac 32881109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 335 - 483
Target Start/End: Complemental strand, 41727013 - 41726864
Alignment:
Q  335 aatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttactt 434  Q
    |||||||| ||||||| ||||||||||||||||||| ||||||||| |||||||||| ||| ||  |||||||||| |  |||||||| |||| ||||||    
T  41727013 aatggttaaggaatctacaaataaaaattttgtcttggaaatataaaatgttattttttataaagtaatgattacatagttttttcataaaaacttactt 41726914  T
Q  435 attttggatgtttaatcaataccc-tagaacactagttagcattctccta 483  Q
    ||||| |||| |||| || | ||| |||  ||||||||| ||||||||||    
T  41726913 attttagatgcttaaccattgcccttagggcactagttatcattctccta 41726864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 333 - 452
Target Start/End: Original strand, 44648932 - 44649051
Alignment:
Q  333 gcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttac 432  Q
    |||||||||| ||||||| |||||| ||||||||||||  |||||||| |||||| |||  || ||  ||||||||||||||||||||||||||| |||     
T  44648932 gcaatggttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttacttttgataaagtaatgattacacaactttttcatgaaaacttat 44649031  T
Q  433 ttattttggatgtttaatca 452  Q
    || ||||||||| |||||||    
T  44649032 ttgttttggatgcttaatca 44649051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 333 - 459
Target Start/End: Complemental strand, 11151041 - 11150916
Alignment:
Q  333 gcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttac 432  Q
    |||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||| |||  |||||| ||||||||||||| |||||  | |||| ||||    
T  11151041 gcaatgattaaggaatctacaaataaaatttttgtcttagaaatataagatgttacttttgatcaaataatgattacacaa-ttttttttaaaaacttac 11150943  T
Q  433 ttattttggatgtttaatcaataccct 459  Q
    |||||||| ||| |||| |||| ||||    
T  11150942 ttattttgaatgcttaaccaatgccct 11150916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 335 - 459
Target Start/End: Original strand, 35901412 - 35901536
Alignment:
Q  335 aatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttactt 434  Q
    |||||||| ||||||| |||||| ||||||||| ||  |||| |||||||||| |||  || ||| ||||||| |||||||||||||| |||| ||||||    
T  35901412 aatggttaaggaatctacaaatagaaattttgttttgaaaatgtaagatgttacttttaattaaataatgattgcacaactttttcataaaaacttactt 35901511  T
Q  435 attttggatgtttaatcaataccct 459  Q
     ||||||||| |||| |||||||||    
T  35901512 gttttggatgcttaaccaataccct 35901536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 335 - 449
Target Start/End: Original strand, 18200677 - 18200791
Alignment:
Q  335 aatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttactt 434  Q
    |||||||| | ||||| |||||||||||||||||||| |||||||| |||||| |||  || ||  ||||||||||||| |||||||| |||  ||||||    
T  18200677 aatggttaagaaatctacaaataaaaattttgtcttaaaaatataacatgttacttttgattaagtaatgattacacaattttttcataaaagcttactt 18200776  T
Q  435 attttggatgtttaa 449  Q
    |||||||||| ||||    
T  18200777 attttggatgcttaa 18200791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 352 - 484
Target Start/End: Original strand, 18647474 - 18647606
Alignment:
Q  352 caaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatc 451  Q
    |||||| ||||||| ||||| |||||||||||||||||||  || |||  |||||||||||| ||||||||| |||||||||| ||||  ||| |||| |    
T  18647474 caaatagaaattttatcttaaaaatataagatgttatttt-gataaaatgatgattacacaattttttcatggaaatttacttgttttaaatgcttaacc 18647572  T
Q  452 aataccc-tagaacactagttagcattctcctac 484  Q
    | ||||| ||  ||||||||||||||||||||||    
T  18647573 attacccttacgacactagttagcattctcctac 18647606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 330 - 483
Target Start/End: Complemental strand, 31331123 - 31330968
Alignment:
Q  330 aaagcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaacttt-ttcatgaaaat 428  Q
    |||||| || ||| ||| ||| |||||| ||||||| |||| |||||||||||||||| |||  |||||||| ||||||||||||||| || | ||| ||    
T  31331123 aaagcattgcttaaggattctacaaatagaaattttatcttcgaaatataagatgttacttttgatcaaacagtgattacacaactttctttaagaacat 31331024  T
Q  429 ttacttattttggatgtttaatcaat-accctagaacactagttagcattctccta 483  Q
    || ||| ||||||||| |||| ||||  || ||||||||| |||| ||||||||||    
T  31331023 ttgcttgttttggatgcttaaccaatgtccttagaacactggttaacattctccta 31330968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 333 - 439
Target Start/End: Original strand, 6270144 - 6270249
Alignment:
Q  333 gcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttac 432  Q
    ||||| |||| ||||||| ||| ||||||||||||||| |||||||||| |||||||||  || ||  ||||||||||||||||||| ||||||| ||||    
T  6270144 gcaatagttaaggaatctacaattaaaaattttgtcttggaaatataaggtgttatttt-gataaagtaatgattacacaacttttttatgaaaacttac 6270242  T
Q  433 ttatttt 439  Q
    || ||||    
T  6270243 ttgtttt 6270249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 333 - 455
Target Start/End: Complemental strand, 13873816 - 13873694
Alignment:
Q  333 gcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttac 432  Q
    |||||| ||| |||||||  |||||||| ||||||||||||||||||||||||||||||  || ||  ||||||| || || |||||||| |||| |||     
T  13873816 gcaatgattaaggaatctataaataaaatttttgtcttagaaatataagatgttatttttaattaagtaatgattgcataattttttcataaaaacttaa 13873717  T
Q  433 ttattttggatgtttaatcaata 455  Q
    || ||||| |||||||| |||||    
T  13873716 ttgttttgaatgtttaaccaata 13873694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 354 - 443
Target Start/End: Original strand, 42361529 - 42361618
Alignment:
Q  354 aataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggat 443  Q
    |||| |||||||||||| ||||||||||||||| |||| ||| ||  || |||| ||||||||||||||||||| |||||| ||||||||    
T  42361529 aatagaaattttgtctttgaaatataagatgttcttttttataaagtaaagattgcacaactttttcatgaaaacttacttgttttggat 42361618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 333 - 449
Target Start/End: Complemental strand, 600491 - 600375
Alignment:
Q  333 gcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttac 432  Q
    |||||| ||| ||||||| ||||||||  ||||| ||| |||||||||||||||| |||  || ||  ||||||| ||||||||||||||||||| |||     
T  600491 gcaatgattaaggaatctacaaataaattttttggcttggaaatataagatgttacttttgataaagtaatgattgcacaactttttcatgaaaacttat 600392  T
Q  433 ttattttggatgtttaa 449  Q
    || |||| |||||||||    
T  600391 ttgttttagatgtttaa 600375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 353 - 454
Target Start/End: Original strand, 23425277 - 23425382
Alignment:
Q  353 aaataaaaattttgtcttagaaatataagat----gttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgttta 448  Q
    ||||||||||||||||| | |||||||||||    ||||||||  |||||| |||||||||||||||||||||| ||||  ||||| ||||||||  |||    
T  23425277 aaataaaaattttgtctcaaaaatataagataaatgttatttttgatcaaataatgattacacaactttttcattaaaacgtacttgttttggatactta 23425376  T
Q  449 atcaat 454  Q
    ||||||    
T  23425377 atcaat 23425382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 334 - 444
Target Start/End: Original strand, 27506943 - 27507051
Alignment:
Q  334 caatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttact 433  Q
    |||||||||  |||||| ||||||||||||  || || |||||||||||| ||| |||  || ||| ||| |||||||||||||||||||||||||||||    
T  27506943 caatggttaaagaatctacaaataaaaatt--gttttggaaatataagatattacttttgataaaataataattacacaactttttcatgaaaatttact 27507040  T
Q  434 tattttggatg 444  Q
    | |||| ||||    
T  27507041 tgttttagatg 27507051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 345 - 483
Target Start/End: Complemental strand, 43917694 - 43917555
Alignment:
Q  345 gaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatg 444  Q
    |||||| ||||||||| |||||||||  |||||||||  |||| |||  |||||| ||| ||||||||| ||||| || ||||||||||| |||||||||    
T  43917694 gaatctacaaataaaatttttgtcttgaaaatataaggcgttacttttaatcaaataataattacacaatttttttataaaaatttacttgttttggatg 43917595  T
Q  445 tttaatcaata-ccctagaacactagttagcattctccta 483  Q
     |||| ||||| || ||   |||| |||||||||||||||    
T  43917594 cttaaccaatatccttaatgcactggttagcattctccta 43917555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 334 - 439
Target Start/End: Original strand, 3347506 - 3347610
Alignment:
Q  334 caatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttact 433  Q
    ||||||||| | ||||| |||||||||||||||||||  ||||||||||||||| |||  || ||  ||| |||||||||| ||||||| |||||||||     
T  3347506 caatggttaagaaatctacaaataaaaattttgtcttgaaaatataagatgttacttttaataaagtaataattacacaac-ttttcataaaaatttaca 3347604  T
Q  434 tatttt 439  Q
    ||||||    
T  3347605 tatttt 3347610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 337 - 459
Target Start/End: Complemental strand, 20542502 - 20542380
Alignment:
Q  337 tggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttat 436  Q
    |||||| ||||||| |||||| |||||| ||||| |||||||||||||||| |||  || ||  ||||||||||||  |||||| | |||| |||||  |    
T  20542502 tggttaaggaatctacaaatagaaatttcgtcttggaaatataagatgttacttttgattaagtaatgattacacacttttttcttaaaaacttactcgt 20542403  T
Q  437 tttggatgtttaatcaataccct 459  Q
    |||||||| |||| |||| ||||    
T  20542402 tttggatgcttaaccaatgccct 20542380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 373 - 444
Target Start/End: Original strand, 17720212 - 17720283
Alignment:
Q  373 aaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatg 444  Q
    |||||||||||||||||||  ||||   ||||||||||||||||||||||||||| ||  || |||||||||    
T  17720212 aaatataagatgttatttttgatcatgtaatgattacacaactttttcatgaaaacttgtttgttttggatg 17720283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 419
Target Start/End: Original strand, 2768559 - 2768641
Alignment:
Q  337 tggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaacttttt 419  Q
    |||||| ||| ||| ||||||||||||||||||| ||||||||| |||||| |||  || ||| ||||||| ||||| |||||    
T  2768559 tggttaaggattctacaaataaaaattttgtcttggaaatataaaatgttagttttaattaaataatgattgcacaatttttt 2768641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 459
Target Start/End: Original strand, 23725687 - 23725745
Alignment:
Q  401 aatgattacacaactttttcatgaaaatttacttattttggatgtttaatcaataccct 459  Q
    |||||| |||||||||||||||||||| |||||| ||||||||| |||| |||| ||||    
T  23725687 aatgatcacacaactttttcatgaaaacttacttgttttggatgcttaaccaatgccct 23725745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 316 - 449
Target Start/End: Complemental strand, 40489985 - 40489853
Alignment:
Q  316 taaccagtgcctttaaagcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaact 415  Q
    |||||||||| ||||  |||||||||| ||||||| ||| ||||||||||| |||  |||||||| |||||| | |  || ||  |||||||||| ||||    
T  40489985 taaccagtgcttttagggcaatggttaaggaatctacaa-taaaaattttgccttgtaaatataaaatgttactattgataaagtaatgattacataact 40489887  T
Q  416 ttttcatgaaaatttacttattttggatgtttaa 449  Q
    ||||||| |||| ||| || |||| ||| |||||    
T  40489886 ttttcataaaaacttatttgttttagatatttaa 40489853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 444
Target Start/End: Complemental strand, 3137499 - 3137408
Alignment:
Q  353 aaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatg 444  Q
    ||||| ||||||||||||  |||| |||||||||| |||  |||||  ||| ||||||||||||||||||  ||| ||| || |||||||||    
T  3137499 aaatagaaattttgtcttgaaaatgtaagatgttacttttgatcaagtaattattacacaactttttcatataaacttatttgttttggatg 3137408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 454
Target Start/End: Complemental strand, 547166 - 547060
Alignment:
Q  352 caaataaaaattttgtcttagaaatataagat----gttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgttt 447  Q
    |||||| ||||||| ||||  |||||||||||    ||||||||  |||||| ||| |||||||||||||||||| ||||  ||||| |||| |||  ||    
T  547166 caaatagaaattttatcttgaaaatataagataaatgttatttttgatcaaataataattacacaactttttcattaaaacgtacttgttttagatactt 547067  T
Q  448 aatcaat 454  Q
    |||||||    
T  547066 aatcaat 547060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 33621474 - 33621438
Alignment:
Q  344 ggaatcttcaaataaaaattttgtcttagaaatataa 380  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  33621474 ggaatctacaaataaaaattttgtcttaaaaatataa 33621438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 333 - 459
Target Start/End: Complemental strand, 27284191 - 27284065
Alignment:
Q  333 gcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttac 432  Q
    |||||||||| ||||||| || ||| |||||||||||| |||||||||||||||| |||  |||||| ||||||| ||||||||||| || |||| |||     
T  27284191 gcaatggttaaggaatctacatatagaaattttgtcttggaaatataagatgttacttttgatcaaataatgattgcacaacttttttataaaaacttat 27284092  T
Q  433 ttattttggatgtttaatcaataccct 459  Q
    ||||||||||||||||| |||| ||||    
T  27284091 ttattttggatgtttaaccaatgccct 27284065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 307 - 448
Target Start/End: Complemental strand, 22019748 - 22019607
Alignment:
Q  307 gagttttgttaaccagtgcctttaaagcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgat 406  Q
    ||||||||||||||||||  ||||    | |||||| |||||||  |||| |||||||||||||  ||||||||||||||||||||||| ||  ||||||    
T  22019748 gagttttgttaaccagtgtttttaggatattggttaaggaatctataaatgaaaattttgtctttaaaatataagatgttattttctattaagtaatgat 22019649  T
Q  407 tacacaactttttcatgaaaatttacttattttggatgttta 448  Q
    |||||||||||||| |||||| |||||| ||||| |||||||    
T  22019648 tacacaactttttcttgaaaacttacttgttttgaatgttta 22019607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 335 - 455
Target Start/End: Original strand, 12076424 - 12076544
Alignment:
Q  335 aatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttactt 434  Q
    |||||||| |||||||||||||||||||||||||||  ||||||||||||||| |||  ||||| ||||||| |||||| ||||| |||| || ||||||    
T  12076424 aatggttaaggaatcttcaaataaaaattttgtcttgaaaatataagatgttaattttgatcaagcaatgatcacacaattttttgatgagaacttactt 12076523  T
Q  435 attttggatgtttaatcaata 455  Q
     |||| ||||||||| |||||    
T  12076524 gttttagatgtttaaccaata 12076544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 335 - 454
Target Start/End: Complemental strand, 20775189 - 20775070
Alignment:
Q  335 aatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttactt 434  Q
    ||||||||  ||||||  ||||||||| ||||||||||||||||||||| |||||||  |||||| ||| |||||| ||||||||||| |||| ||||||    
T  20775189 aatggttaatgaatctataaataaaaaatttgtcttagaaatataagatattatttttgatcaaataattattacataactttttcataaaaacttactt 20775090  T
Q  435 attttggatgtttaatcaat 454  Q
     ||||||||| |||| ||||    
T  20775089 gttttggatgcttaaccaat 20775070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 333 - 481
Target Start/End: Complemental strand, 13967964 - 13967814
Alignment:
Q  333 gcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcat-gaaaattta 431  Q
    ||||| |||| ||||||| |||||| |||||||||||| | |||||||||||||||||| ||||||  |||||||| |||||||||||||  |||| |||    
T  13967964 gcaatagttaaggaatctacaaatagaaattttgtcttggtaatataagatgttattttttatcaagtaatgattatacaactttttcataaaaaaatta 13967865  T
Q  432 cttattttggatgtttaatcaataccct-agaacactagttagcattctcc 481  Q
    | | |||||||||||||| || |||| | ||  |||| |||||||||||||    
T  13967864 catgttttggatgtttaaccattaccatgagggcactggttagcattctcc 13967814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 334 - 454
Target Start/End: Original strand, 16341097 - 16341217
Alignment:
Q  334 caatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttact 433  Q
    ||||||||| ||||| | ||||||||| ||||||||| ||||||||| |||||| |||  || ||  |||||||||| || |||||||| |||||||| |    
T  16341097 caatggttaaggaatttacaaataaaatttttgtctttgaaatataaaatgttacttttgattaagtaatgattacataattttttcataaaaatttatt 16341196  T
Q  434 tattttggatgtttaatcaat 454  Q
    |||||||||||||||| ||||    
T  16341197 tattttggatgtttaaccaat 16341217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 333 - 449
Target Start/End: Complemental strand, 12095077 - 12094961
Alignment:
Q  333 gcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttac 432  Q
    ||||| |||| ||||||| |||||| ||||||||  ||  ||||||||||| ||| |||  || ||  |||||||||||||||||||||| |||| ||||    
T  12095077 gcaatagttaaggaatctacaaatagaaattttgcattgaaaatataagatattacttttgataaagtaatgattacacaactttttcataaaaacttac 12094978  T
Q  433 ttattttggatgtttaa 449  Q
    |||||||||||||||||    
T  12094977 ttattttggatgtttaa 12094961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 334 - 456
Target Start/End: Complemental strand, 27133667 - 27133545
Alignment:
Q  334 caatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttact 433  Q
    ||||||||| ||||||  |||||| ||| |||||||| |||||||||||| |||||||   ||||  |||||||| ||||||||||||| |||| ||||     
T  27133667 caatggttaaggaatcaccaaatagaaagtttgtctttgaaatataagatattatttttgttcaagtaatgattatacaactttttcataaaaacttacc 27133568  T
Q  434 tattttggatgtttaatcaatac 456  Q
    |||||| |||| |||| ||||||    
T  27133567 tattttagatgcttaaccaatac 27133545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 333 - 449
Target Start/End: Original strand, 31991452 - 31991568
Alignment:
Q  333 gcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttac 432  Q
    |||||||||| ||||||  ||| |||||||||||  ||  |||||||||||||||||||  || ||  ||| ||||||| | ||||||||||||||||||    
T  31991452 gcaatggttaaggaatccacaattaaaaattttgctttgaaaatataagatgttatttttgataaagtaataattacacgattttttcatgaaaatttac 31991551  T
Q  433 ttattttggatgtttaa 449  Q
    |||||||  ||||||||    
T  31991552 ttattttatatgtttaa 31991568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 337 - 459
Target Start/End: Original strand, 2824814 - 2824936
Alignment:
Q  337 tggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttat 436  Q
    |||||| ||| ||| ||||||  | ||||||||| | |||||||||||||| |||  |||||  |||||||||||||| ||||||| |||| || ||| |    
T  2824814 tggttaaggattctacaaatagcacttttgtcttgggaatataagatgttacttttgatcaagtaatgattacacaacattttcataaaaacttgcttgt 2824913  T
Q  437 tttggatgtttaatcaataccct 459  Q
    ||| |||| ||||||||| ||||    
T  2824914 tttagatgcttaatcaatgccct 2824936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 373 - 480
Target Start/End: Complemental strand, 19480616 - 19480508
Alignment:
Q  373 aaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatcaataccctaga-acactagtt 471  Q
    ||||||||||||||| |||  || ||  |||||||||||||||||||||| |||| |||||| ||||  ||  |||||||||||||| ||  || |||||    
T  19480616 aaatataagatgttacttttgataaagtaatgattacacaactttttcataaaaacttacttgttttaaattcttaatcaatacccttgaggcattagtt 19480517  T
Q  472 agcattctc 480  Q
    |||||||||    
T  19480516 agcattctc 19480508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 335 - 427
Target Start/End: Complemental strand, 28176892 - 28176801
Alignment:
Q  335 aatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaa 427  Q
    |||||||| | ||| | |||||| ||||||| ||||||||||||||||| |||||||  || ||| |||||||||||| ||||||||| ||||    
T  28176892 aatggttaagaaatttacaaatagaaattttatcttagaaatataagatattatttt-gataaaataatgattacacatctttttcattaaaa 28176801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 352 - 457
Target Start/End: Original strand, 7437842 - 7437947
Alignment:
Q  352 caaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatc 451  Q
    |||||||||| | |||||| |||||||||||||||| |||  | |||   ||||||||||||||||||| | |||| ||  |||||||| ||| |||| |    
T  7437842 caaataaaaaatgtgtcttggaaatataagatgttacttttgaacaagtcatgattacacaactttttcgtaaaaacttgtttattttgaatgcttaacc 7437941  T
Q  452 aatacc 457  Q
    ||||||    
T  7437942 aatacc 7437947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 346 - 419
Target Start/End: Original strand, 22611904 - 22611977
Alignment:
Q  346 aatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaacttttt 419  Q
    ||||| |||||| ||||||||||||| ||||||||||||||| |||| || ||  ||||||||| ||| |||||    
T  22611904 aatctacaaatataaattttgtcttaaaaatataagatgttactttcgataaagtaatgattactcaatttttt 22611977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 31861444 - 31861513
Alignment:
Q  355 ataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatga 424  Q
    ||||||||||| | || |||||||||||||||| |||  |||||  ||||||||||||| ||||||||||    
T  31861444 ataaaaattttattttggaaatataagatgttacttttgatcaagtaatgattacacaaatttttcatga 31861513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 353 - 450
Target Start/End: Complemental strand, 21755974 - 21755875
Alignment:
Q  353 aaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttc--atgaaaatttacttattttggatgtttaat 450  Q
    ||||| |||||||||||   |||||||| || ||||||| ||| ||| ||||||||||| | |||||   |||||||||||||| ||||| |||||||||    
T  21755974 aaatagaaattttgtctcgaaaatataaaatattattttttattaaataatgattacaccattttttttaatgaaaatttacttgttttgcatgtttaat 21755875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 433
Target Start/End: Original strand, 31089779 - 31089878
Alignment:
Q  333 gcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttac 432  Q
    |||||| ||| ||||||| | |||| |||||||||||  ||||||||| |||||| |||  || ||  |||||||||||||||||||||| |||| ||||    
T  31089779 gcaatgattaaggaatctaccaatagaaattttgtctaggaaatataa-atgttacttttgataaagtaatgattacacaactttttcataaaaacttac 31089877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 344 - 439
Target Start/End: Original strand, 55126783 - 55126879
Alignment:
Q  344 ggaatcttcaaataaaaattttgtcttagaaatataagatgttattttct-atcaaacaatgattacacaactttttcatgaaaatttacttatttt 439  Q
    ||||||| ||||||||  |||||| ||  |||||||| |||||| ||| | || ||| |||||||||||||||||||||| |||| ||| |||||||    
T  55126783 ggaatctacaaataaattttttgttttgaaaatataaaatgttactttttgataaaataatgattacacaactttttcataaaaacttatttatttt 55126879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 333 - 387
Target Start/End: Original strand, 31089510 - 31089564
Alignment:
Q  333 gcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgtta 387  Q
    |||||| ||| |||||||  ||||||||||||||||| | |||||||||||||||    
T  31089510 gcaatgattaaggaatctataaataaaaattttgtctaaaaaatataagatgtta 31089564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 459
Target Start/End: Original strand, 39810737 - 39810822
Alignment:
Q  373 aaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatcaataccct 459  Q
    ||||||||||||||| |||  |||||  ||| ||||||||| ||| |||||||||  || || |||||||||||||| |||||||||    
T  39810737 aaatataagatgttacttttgatcaagtaataattacacaa-tttatcatgaaaacatatttgttttggatgtttaaccaataccct 39810822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 459
Target Start/End: Original strand, 52837333 - 52837387
Alignment:
Q  405 attacacaactttttcatgaaaatttacttattttggatgtttaatcaataccct 459  Q
    |||||||||||||||||| ||||||| ||| ||||||||| |||| |||| ||||    
T  52837333 attacacaactttttcataaaaattttcttgttttggatgcttaaccaatgccct 52837387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 353 - 413
Target Start/End: Complemental strand, 37183137 - 37183077
Alignment:
Q  353 aaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaa 413  Q
    |||||||||| || ||||| |||||||| ||||||||||  |||||  |||||||||||||    
T  37183137 aaataaaaatcttatcttataaatataatatgttatttttgatcaagtaatgattacacaa 37183077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 336 - 454
Target Start/End: Original strand, 30941466 - 30941584
Alignment:
Q  336 atggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttactta 435  Q
    ||||||| |||||||||||||| |  ||||||||| ||||||||| |||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||     
T  30941466 atggttaaggaatcttcaaatacattttttgtcttggaaatataacatgttattttttatcaaacaataattacacaactttttcatgtaaacttacttg 30941565  T
Q  436 ttttggatgtttaatcaat 454  Q
    || |||||| |||| ||||    
T  30941566 ttctggatgcttaaccaat 30941584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 334 - 483
Target Start/End: Original strand, 33148126 - 33148275
Alignment:
Q  334 caatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttact 433  Q
    ||||||||| ||||| | |||||  ||||||||||||| |||||||||||| || |||  |||||  ||||||||||||| |||||||| |||| |||||    
T  33148126 caatggttaaggaatatacaaattgaaattttgtcttaaaaatataagatgctacttttgatcaagtaatgattacacaattttttcataaaaacttact 33148225  T
Q  434 tattttggatgtttaatcaataccctagaacactagttagcattctccta 483  Q
    | ||||| ||||||||  ||| |||| || || |||||||||||||||||    
T  33148226 tgttttgaatgtttaacaaatgcccttgagcattagttagcattctccta 33148275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 333 - 449
Target Start/End: Complemental strand, 26829611 - 26829495
Alignment:
Q  333 gcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttac 432  Q
    |||||||||| | ||| | ||| || |||||||||||| |||||||||||||||| |||  || ||  ||||||||||||||||||||||||||||||||    
T  26829611 gcaatggttaagaaatttacaattagaaattttgtcttggaaatataagatgttacttttgataaagtaatgattacacaactttttcatgaaaatttac 26829512  T
Q  433 ttattttggatgtttaa 449  Q
    ||||||| |||| ||||    
T  26829511 ttattttagatgcttaa 26829495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 309 - 449
Target Start/End: Original strand, 8001717 - 8001857
Alignment:
Q  309 gttttgttaaccagtgcctttaaagcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgatta 408  Q
    |||||| ||||||||||| | |  |||||||||| |||||||  ||||| ||||||| ||||  ||||||||||||||| |||  || ||  ||||||||    
T  8001717 gttttgctaaccagtgccctcagggcaatggttaaggaatctagaaatagaaattttatcttgaaaatataagatgttacttttgataaagtaatgatta 8001816  T
Q  409 cacaactttttcatgaaaatttacttattttggatgtttaa 449  Q
    |||||||||| ||||||||||||||| |||| |||| ||||    
T  8001817 cacaacttttacatgaaaatttacttgttttagatgcttaa 8001857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 344 - 419
Target Start/End: Complemental strand, 48580004 - 48579929
Alignment:
Q  344 ggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaacttttt 419  Q
    ||||||| | |||| ||||||||||||||||||||||||||| |||||  |||||| |||||||||||||||||||    
T  48580004 ggaatctactaatagaaattttgtcttagaaatataagatgtaatttttaatcaaataatgattacacaacttttt 48579929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 333 - 459
Target Start/End: Original strand, 46295865 - 46295991
Alignment:
Q  333 gcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttac 432  Q
    |||||||||| ||||||| |||||||||||||| ||||  |||||||| |||||| |||  |||||  ||| || ||||||||||||||| |||| |||     
T  46295865 gcaatggttaaggaatctacaaataaaaattttatcttgaaaatataaaatgttacttttgatcaagtaatcatgacacaactttttcataaaaacttat 46295964  T
Q  433 ttattttggatgtttaatcaataccct 459  Q
    || ||||||||| ||||  ||||||||    
T  46295965 ttgttttggatgcttaacaaataccct 46295991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 306 - 439
Target Start/End: Complemental strand, 11449206 - 11449073
Alignment:
Q  306 tgagttttgttaaccagtgcctttaaagcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatga 405  Q
    ||||| ||||||| ||||||||| |  | ||||||||  |||||| |||||||||| ||||||||| |||||||| |||||| |||  ||||   ||| |    
T  11449206 tgagtcttgttaatcagtgccttcacggaaatggttaaagaatctacaaataaaaaatttgtcttaaaaatataatatgttaattttgatcatgtaataa 11449107  T
Q  406 ttacacaactttttcatgaaaatttacttatttt 439  Q
    ||||| ||||||||||| |||| |||||||||||    
T  11449106 ttacataactttttcataaaaacttacttatttt 11449073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 346 - 454
Target Start/End: Complemental strand, 30109333 - 30109224
Alignment:
Q  346 aatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattaca-caactttttcatgaaaatttacttattttggatg 444  Q
    ||||| |||||| ||||||||| ||  |||||||| |||||||||| ||||||||||||||||||  |  ||||| || |||| |||||| |||||||||    
T  30109333 aatctccaaatagaaattttgttttgaaaatataatatgttattttttatcaaacaatgattacatgattttttttattaaaacttacttgttttggatg 30109234  T
Q  445 tttaatcaat 454  Q
    ||||||||||    
T  30109233 tttaatcaat 30109224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 344 - 432
Target Start/End: Original strand, 10226467 - 10226555
Alignment:
Q  344 ggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttac 432  Q
    ||||||| |||||| ||||||||||||  ||||||||||||||| |||  || ||  ||||||||||||||||||||||||||| ||||    
T  10226467 ggaatctacaaatagaaattttgtcttgaaaatataagatgttaattttgataaagtaatgattacacaactttttcatgaaaacttac 10226555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 334 - 449
Target Start/End: Complemental strand, 5069614 - 5069500
Alignment:
Q  334 caatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttact 433  Q
    |||||||||  |||||| || ||||||||||||||||  ||||||||||| |||||||  || ||  |||||||||| |||||||| ||||||| ||| |    
T  5069614 caatggttaaagaatctacatataaaaattttgtcttgtaaatataagatattatttttgataaagtaatgattacataacttttt-atgaaaacttatt 5069516  T
Q  434 tattttggatgtttaa 449  Q
    |||||| |||| ||||    
T  5069515 tattttagatgcttaa 5069500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 352 - 459
Target Start/End: Original strand, 17169283 - 17169390
Alignment:
Q  352 caaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatc 451  Q
    ||||||||||| |||||||  |||||||||||||||||||  || ||  ||| |||| |||||||||||||||||| ||| || |||| |||| |||| |    
T  17169283 caaataaaaatattgtcttgaaaatataagatgttatttttgataaagtaattattatacaactttttcatgaaaacttatttgttttagatgcttaacc 17169382  T
Q  452 aataccct 459  Q
    | ||||||    
T  17169383 attaccct 17169390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 312 - 439
Target Start/End: Complemental strand, 27688619 - 27688492
Alignment:
Q  312 ttgttaaccagtgcctttaaagcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacac 411  Q
    ||||||||||||| | | || | ||| |||| ||||||| ||||| |||||||| | ||  ||||||||||||||| |||  || ||  |||||||||||    
T  27688619 ttgttaaccagtgtcatcaaggaaattgttaaggaatctacaaattaaaattttatattgaaaatataagatgttacttttgataaagtaatgattacac 27688520  T
Q  412 aactttttcatgaaaatttacttatttt 439  Q
    || ||||||||||||| |||||| ||||    
T  27688519 aagtttttcatgaaaacttacttgtttt 27688492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 334 - 456
Target Start/End: Original strand, 13969094 - 13969216
Alignment:
Q  334 caatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttact 433  Q
    |||| |||| ||||||| |||||| ||||||||||||  |||||||| |||||| |||  || ||  ||| ||||||||| |||||||| |||| |||||    
T  13969094 caatagttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttacttttaattaagtaattattacacaattttttcataaaaacttact 13969193  T
Q  434 tattttggatgtttaatcaatac 456  Q
    | |||||| || |||| ||||||    
T  13969194 tgttttggttgcttaaccaatac 13969216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 335 - 443
Target Start/End: Original strand, 50015771 - 50015879
Alignment:
Q  335 aatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttactt 434  Q
    |||| ||| |||||||  |||||  |||||||||||| ||||||| ||| ||| |||  ||||| ||| ||||| ||||||||||||| |||||||| ||    
T  50015771 aatgattaaggaatctcaaaataggaattttgtcttaaaaatatatgatattacttttgatcaagcaacgattatacaactttttcataaaaatttattt 50015870  T
Q  435 attttggat 443  Q
     ||||||||    
T  50015871 gttttggat 50015879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 401 - 452
Target Start/End: Original strand, 34347572 - 34347623
Alignment:
Q  401 aatgattacacaactttttcatgaaaatttacttattttggatgtttaatca 452  Q
    |||||||||||||||||||||| || |||||||| ||||||||| |||||||    
T  34347572 aatgattacacaactttttcataaagatttacttgttttggatgcttaatca 34347623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 3529158 - 3529109
Alignment:
Q  405 attacacaactttttcatgaaaatttacttattttggatgtttaatcaat 454  Q
    ||||||||| ||||| |||||||||||||||||||||||| |||| ||||    
T  3529158 attacacaatttttttatgaaaatttacttattttggatgcttaaccaat 3529109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 353 - 454
Target Start/End: Complemental strand, 5069802 - 5069701
Alignment:
Q  353 aaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatca 452  Q
    ||||| |||||||||||| |||||||||| ||||| |||  |  ||||||||||||||  | ||| |  |||||| |||||| |||||||||||||| ||    
T  5069802 aaatagaaattttgtcttggaaatataaggtgttacttttgactaaacaatgattacatgattttattgtgaaaacttacttgttttggatgtttaacca 5069703  T
Q  453 at 454  Q
    ||    
T  5069702 at 5069701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 385 - 438
Target Start/End: Complemental strand, 40430877 - 40430824
Alignment:
Q  385 ttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattt 438  Q
    ||||||| || |||| ||||||||||||||||||||||||||| || |||||||    
T  40430877 ttattttttaacaaataatgattacacaactttttcatgaaaacttgcttattt 40430824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 316 - 440
Target Start/End: Original strand, 34382610 - 34382733
Alignment:
Q  316 taaccagtgcctttaaagcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaact 415  Q
    ||||||||||| |||| |||||| ||| | || ||  ||||||||| ||| ||||| ||||||||| | | |||||  || ||||||| |||||||||||    
T  34382610 taaccagtgcccttaaggcaatgattaagaaaactataaataaaaaatttatcttaaaaatataagttttaatttttgattaaacaataattacacaact 34382709  T
Q  416 ttttcatgaaaatttacttattttg 440  Q
    |||| || |||| |||||| |||||    
T  34382710 tttt-ataaaaagttacttgttttg 34382733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 334 - 384
Target Start/End: Complemental strand, 39993496 - 39993446
Alignment:
Q  334 caatggttagggaatcttcaaataaaaattttgtcttagaaatataagatg 384  Q
    ||||||||| | ||||| |||||||||||||||||||  ||||||||||||    
T  39993496 caatggttaagaaatctacaaataaaaattttgtcttgaaaatataagatg 39993446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 763185 - 763233
Alignment:
Q  355 ataaaaattttgtcttagaaatataagatgttattttctatcaaacaat 403  Q
    ||||||||| ||||||||||||||||| | |||||||  ||||||||||    
T  763185 ataaaaattatgtcttagaaatataagtttttatttttaatcaaacaat 763233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 401 - 482
Target Start/End: Complemental strand, 38597531 - 38597446
Alignment:
Q  401 aatgattacacaactttttcatgaaaatttacttattttggatgtttaatcaataccc----tagaacactagttagcattctcct 482  Q
    |||||||| |||||||||| || |||| |||||| ||||||||  |||| |||| |||    ||| ||||||||||||||||||||    
T  38597531 aatgattagacaacttttttattaaaacttacttgttttggatacttaaccaatgcccctactagtacactagttagcattctcct 38597446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 333 - 449
Target Start/End: Complemental strand, 38359166 - 38359050
Alignment:
Q  333 gcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttac 432  Q
    |||||||||| |||||||  ||||||||||||| ||||||||||||||||||||| |||  || ||  || |||||| || |||||||||||||| ||||    
T  38359166 gcaatggttaaggaatctataaataaaaattttatcttagaaatataagatgttaattttgataaagtaacgattacccatctttttcatgaaaacttac 38359067  T
Q  433 ttattttggatgtttaa 449  Q
    ||||||| |||||||||    
T  38359066 ttattttagatgtttaa 38359050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 316 - 449
Target Start/End: Complemental strand, 50958996 - 50958863
Alignment:
Q  316 taaccagtgcctttaaagcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaact 415  Q
    ||||||||| | |||  |||||| |||  |||| |||||||| |||||||||||| ||||||||| ||||||||||  |||||  ||||||||||||| |    
T  50958996 taaccagtgtccttagggcaatgattaaagaattttcaaatagaaattttgtcttggaaatataacatgttatttttgatcaagaaatgattacacaatt 50958897  T
Q  416 ttttcatgaaaatttacttattttggatgtttaa 449  Q
    ||||||| |||| |||||| ||||||||| ||||    
T  50958896 ttttcataaaaacttacttgttttggatgcttaa 50958863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 353 - 482
Target Start/End: Complemental strand, 48338912 - 48338782
Alignment:
Q  353 aaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatca 452  Q
    ||||| ||||||| |||| ||||||||||||||||||||  || ||  ||| ||||||||||||||| || |||| |||||| ||||||||| |||| ||    
T  48338912 aaatagaaattttatcttggaaatataagatgttatttttgataaagtaattattacacaacttttttataaaaacttacttgttttggatgcttaacca 48338813  T
Q  453 ataccc-tagaacactagttagcattctcct 482  Q
     | ||| |||| |||||||||||||||||||    
T  48338812 ttgcccttagagcactagttagcattctcct 48338782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 345 - 458
Target Start/End: Complemental strand, 53818932 - 53818820
Alignment:
Q  345 gaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatg 444  Q
    |||||| |||||||||||||||| || || |||||| || |||||||  |||||  |||||||| ||||||||||||| |||| ||| ||||||||||||    
T  53818932 gaatctacaaataaaaattttgttttggagatataaaat-ttatttttaatcaagtaatgattatacaactttttcattaaaacttatttattttggatg 53818834  T
Q  445 tttaatcaataccc 458  Q
     |||||||||||||    
T  53818833 cttaatcaataccc 53818820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 345 - 449
Target Start/End: Complemental strand, 55446839 - 55446736
Alignment:
Q  345 gaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatg 444  Q
    |||||| ||||||||||||||||||| |||||||||||||||| |||  || ||  ||||||||||||||||||| || |||| |||||| |||| ||||    
T  55446839 gaatctacaaataaaaattttgtcttggaaatataagatgttacttttaataaagtaatgattacacaacttttt-ataaaaacttacttcttttagatg 55446741  T
Q  445 tttaa 449  Q
    |||||    
T  55446740 tttaa 55446736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 335 - 480
Target Start/End: Complemental strand, 44698335 - 44698189
Alignment:
Q  335 aatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttactt 434  Q
    |||||||| | ||||| |||||| ||||||||||||  ||||||||||||||| |||  || ||| ||||||||||||| |||||||| |||| ||| ||    
T  44698335 aatggttaagaaatctacaaatagaaattttgtcttgaaaatataagatgttacttttgataaaataatgattacacaattttttcataaaaacttattt 44698236  T
Q  435 attttggatgtttaatcaataccctag-aacactagttagcattctc 480  Q
     |||| ||| ||||| || | | | || |||||||||||||||||||    
T  44698235 gttttagatatttaaccattgctccagaaacactagttagcattctc 44698189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 359 - 456
Target Start/End: Complemental strand, 29032505 - 29032408
Alignment:
Q  359 aaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatcaatac 456  Q
    ||||||||||||| ||||||||||||||| |||  |||||  |||||||||||||||||||||| |||| || ||| |||| |||  |||||||||||    
T  29032505 aaattttgtcttaaaaatataagatgttacttttgatcaagtaatgattacacaactttttcataaaaacttgcttgttttagatacttaatcaatac 29032408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 364 - 449
Target Start/End: Original strand, 31494030 - 31494115
Alignment:
Q  364 ttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaa 449  Q
    ||||||| ||||||||||| |||| |||  |||||| ||||||||||||| |||||||| |||| |||||| ||||||||||||||    
T  31494030 ttgtcttggaaatataagaagttaattttaatcaaataatgattacacaattttttcataaaaacttacttgttttggatgtttaa 31494115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 316 - 459
Target Start/End: Original strand, 6785771 - 6785915
Alignment:
Q  316 taaccagtgcctttaaagcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaac- 414  Q
    ||||||||||| | |  |||||||||| ||| ||| |||||| || |||||||||  |||||||| |||||| |||  |||||  |||||||||||| |     
T  6785771 taaccagtgccctcagggcaatggttaaggattctacaaatagaatttttgtcttgaaaatataaaatgttacttttgatcaagtaatgattacacatct 6785870  T
Q  415 tttttcatgaaaatttacttattttggatgtttaatcaataccct 459  Q
    ||||||||||||| || ||| |||| ||||||||| |||||||||    
T  6785871 tttttcatgaaaacttgcttgtttttgatgtttaaccaataccct 6785915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 344 - 467
Target Start/End: Original strand, 11676741 - 11676865
Alignment:
Q  344 ggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggat 443  Q
    ||||||| |||||| ||||||||||||  ||||| |||| |||| |||  |||||| |||||| |||||| |||||| |||||| || ||| ||||||||    
T  11676741 ggaatctacaaatataaattttgtcttgaaaataaaagacgttacttttgatcaaataatgataacacaattttttcttgaaaacttgcttgttttggat 11676840  T
Q  444 gtttaatcaataccc-tagaacact 467  Q
    |||||| |||| ||| |||||||||    
T  11676841 gtttaaccaatgcccttagaacact 11676865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 333 - 466
Target Start/End: Original strand, 28709560 - 28709693
Alignment:
Q  333 gcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttac 432  Q
    ||||||||||  ||||||  ||||| ||||||| ||||  |||||||| |||||| |||  |||||| |||||||| |||||||||| ||  ||| ||||    
T  28709560 gcaatggttaaagaatctataaatagaaattttatcttgaaaatataaaatgttacttttgatcaaataatgattatacaacttttttatagaaacttac 28709659  T
Q  433 ttattttggatgtttaatcaataccctagaacac 466  Q
    |||||||| ||| |||| |||||| || ||||||    
T  28709660 ttattttgaatgcttaaccaatactcttgaacac 28709693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 353 - 449
Target Start/End: Complemental strand, 47334959 - 47334863
Alignment:
Q  353 aaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaa 449  Q
    ||||| ||||||||||||| ||||||||||  ||||||| ||| ||| ||||||||||||||||||  || |||||||| || ||||  ||||||||    
T  47334959 aaatagaaattttgtcttaaaaatataagactttattttttataaaataatgattacacaacttttcaataaaaatttatttgttttaaatgtttaa 47334863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 334 - 441
Target Start/End: Complemental strand, 4020216 - 4020109
Alignment:
Q  334 caatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttact 433  Q
    ||||||||| ||||||| |||||| ||||||||||||  |||||||| |||||| |||  || ||  ||| ||||||||| |||||||| |||| |||||    
T  4020216 caatggttaaggaatctacaaatagaaattttgtcttgaaaatataaaatgttaattttgattaagtaattattacacaattttttcataaaaacttact 4020117  T
Q  434 tattttgg 441  Q
    | ||||||    
T  4020116 tgttttgg 4020109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 334 - 459
Target Start/End: Original strand, 635700 - 635825
Alignment:
Q  334 caatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttact 433  Q
    ||||||||| ||||||| |||||| ||||||||||||  | | ||||||||||| |||  || ||| ||||||||||||||||||  || |||| |||      
T  635700 caatggttaaggaatctacaaatagaaattttgtcttgaataaataagatgttacttttgattaaataatgattacacaacttttcaataaaaacttata 635799  T
Q  434 tattttggatgtttaatcaataccct 459  Q
    | ||||||||| |||| |||| ||||    
T  635800 tgttttggatgcttaaccaatgccct 635825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 352 - 449
Target Start/End: Complemental strand, 49261880 - 49261783
Alignment:
Q  352 caaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaa 449  Q
    |||||| ||||||||||||  ||||||||||||||| |||  ||  |  ||| ||||||||| |||||||||||||| ||||| ||||||||| ||||    
T  49261880 caaatagaaattttgtcttgtaaatataagatgttacttttgatagagtaataattacacaattttttcatgaaaatgtacttgttttggatgcttaa 49261783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 346 - 418
Target Start/End: Complemental strand, 8326243 - 8326171
Alignment:
Q  346 aatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttt 418  Q
    |||||||||||| ||||||||| ||| |||||||| |||||| |||  ||||| |||||||||||| ||||||    
T  8326243 aatcttcaaatagaaattttgttttaaaaatataatatgttacttttgatcaagcaatgattacaccactttt 8326171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 354 - 454
Target Start/End: Original strand, 34145920 - 34146019
Alignment:
Q  354 aataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatcaa 453  Q
    |||| ||||||||| || ||||||||||||||||||||  |||||  ||| |||| |||| || ||||| ||||||||||  ||||||||| ||||||||    
T  34145920 aatataaattttgtgttggaaatataagatgttatttttgatcaagtaataattatacaatttgttcat-aaaatttactagttttggatgcttaatcaa 34146018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 482
Target Start/End: Original strand, 1711919 - 1712068
Alignment:
Q  334 caatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttact 433  Q
    ||||||||| |||||||  || || ||||||||||||  |||||||||||||||  ||  |  ||  ||| |||| || | |||||  | ||||||||||    
T  1711919 caatggttaaggaatctaaaattataaattttgtcttgaaaatataagatgttacatttgactaagtaataattatactattttttattaaaaatttact 1712018  T
Q  434 tattttggatgtttaatcaataccc-tagaacactagttagcattctcct 482  Q
    |||||| | ||||||| |||||||| ||| ||||| ||||||||||||||    
T  1712019 tattttagttgtttaaccaatacccttagtacactggttagcattctcct 1712068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 449
Target Start/End: Original strand, 4128727 - 4128803
Alignment:
Q  373 aaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaa 449  Q
    ||||||||||| |||||||  || ||  |||||||||||||  |||||||||||| |||||| ||||||||| ||||    
T  4128727 aaatataagatattatttttgataaagtaatgattacacaatattttcatgaaaacttacttgttttggatgcttaa 4128803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 482
Target Start/End: Complemental strand, 49543305 - 49543174
Alignment:
Q  352 caaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatc 451  Q
    |||||| ||||||| ||||  ||||||||||| | ||||| ||| ||  ||| ||||||||  |||||||||||||||||||  ||||| ||| |||| |    
T  49543305 caaatagaaattttatctttaaaatataagatatcattttatattaagtaattattacacacttttttcatgaaaatttactcgttttgaatgcttaacc 49543206  T
Q  452 aat-accctagaacactagttagcattctcct 482  Q
    |||  || ||| |||||| ||| |||||||||    
T  49543205 aatgtccttaggacactaattaacattctcct 49543174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 454
Target Start/End: Complemental strand, 25319562 - 25319461
Alignment:
Q  353 aaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatca 452  Q
    ||||||||||||||| ||  |||||||| |||||| |||  |  ||| |||||||||||| ||||| ||| |||| ||| || |||| ||||||||| ||    
T  25319562 aaataaaaattttgtattgaaaatataaaatgttacttttgactaaataatgattacacaccttttacattaaaacttaattgttttagatgtttaacca 25319463  T
Q  453 at 454  Q
    ||    
T  25319462 at 25319461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 391
Target Start/End: Complemental strand, 31904766 - 31904734
Alignment:
Q  359 aaattttgtcttagaaatataagatgttatttt 391  Q
    ||||||||||||||||||||||||| |||||||    
T  31904766 aaattttgtcttagaaatataagattttatttt 31904734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 7e-23; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 335 - 454
Target Start/End: Original strand, 1309720 - 1309839
Alignment:
Q  335 aatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttactt 434  Q
    |||||||| ||||||| |||||| ||||||| ||||| |||||||| | |||| ||| ||||||| ||  ||||||||| |||||||| |||||||| ||    
T  1309720 aatggttaaggaatctacaaatagaaattttatcttaaaaatataatacgttactttttatcaaataactattacacaattttttcataaaaatttattt 1309819  T
Q  435 attttggatgtttaatcaat 454  Q
    ||||||||||||||| ||||    
T  1309820 attttggatgtttaaccaat 1309839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 309 - 439
Target Start/End: Original strand, 8896568 - 8896698
Alignment:
Q  309 gttttgttaaccagtgcctttaaagcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgatta 408  Q
    |||||||||||||||||| | | | ||||| |||  |||||| |||||| ||||||||||||| ||||||||||||||| |||  ||||   ||||||||    
T  8896568 gttttgttaaccagtgccctcacaacaatgtttaaagaatctacaaatataaattttgtcttaaaaatataagatgttacttttgatcaggtaatgatta 8896667  T
Q  409 cacaactttttcatgaaaatttacttatttt 439  Q
    ||||| ||||||||||||| |||||| ||||    
T  8896668 cacaattttttcatgaaaacttacttgtttt 8896698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 43626453 - 43626350
Alignment:
Q  346 aatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgt 445  Q
    |||||||||||||||||||||||||  ||| || |||||||||||| ||| ||  ||| ||||||||| |||||||| |||||||| ||||||| |||||    
T  43626453 aatcttcaaataaaaattttgtcttgaaaaaattagatgttattttttataaagtaataattacacaattttttcataaaaatttatttattttagatgt 43626354  T
Q  446 ttaa 449  Q
    ||||    
T  43626353 ttaa 43626350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 346 - 482
Target Start/End: Original strand, 23142660 - 23142797
Alignment:
Q  346 aatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaac-tttttcatgaaaatttacttattttggatg 444  Q
    ||||| |||||| ||||||||| || ||||||||||||||||||||  |||||  ||| |||||||||| |||||||| |||| ||||||||||||||||    
T  23142660 aatctacaaatagaaattttgt-ttggaaatataagatgttatttttgatcaagtaattattacacaacttttttcataaaaacttacttattttggatg 23142758  T
Q  445 tttaatcaataccctaga-acactagttagcattctcct 482  Q
    ||||| |||| | || || ||||| |||| |||||||||    
T  23142759 tttaaccaatgctcttgagacactcgttaacattctcct 23142797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 332 - 477
Target Start/End: Complemental strand, 37928420 - 37928274
Alignment:
Q  332 agcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaattta 431  Q
    |||||||||||  ||||||  ||||| ||||||| ||||  |||||||| ||||||||||  || ||  ||| ||||||||||||||| || |||| |||    
T  37928420 agcaatggttaaagaatctataaatataaattttatcttgaaaatataaaatgttatttttgataaagtaattattacacaacttttttataaaaactta 37928321  T
Q  432 cttattttggatgtttaatcaataccctaga-acactagttagcatt 477  Q
    |||||||||||||||||| ||||  ||| || |||||||||||||||    
T  37928320 cttattttggatgtttaaccaatgtccttgagacactagttagcatt 37928274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 359 - 481
Target Start/End: Complemental strand, 16980035 - 16979912
Alignment:
Q  359 aaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatcaataccc 458  Q
    ||||||||||||  ||||||||||||||| |||  ||| |  ||| || ||||||||||||||| ||||||||||| ||||||||| |||| |||| |||    
T  16980035 aaattttgtcttgaaaatataagatgttacttttgatcgagtaataatcacacaactttttcataaaaatttacttgttttggatgcttaaccaatgccc 16979936  T
Q  459 -tagaacactagttagcattctcc 481  Q
     |||| ||| ||||||||||||||    
T  16979935 ttagagcaccagttagcattctcc 16979912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 354 - 455
Target Start/End: Original strand, 31487725 - 31487826
Alignment:
Q  354 aataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatcaa 453  Q
    |||| ||||||| |||| |||||||||||||||||||| ||| ||  ||| ||||||||| |||||| | |||| ||| ||||||||||||||||| |||    
T  31487725 aatagaaattttatcttggaaatataagatgttattttttattaagtaataattacacaattttttcttaaaaacttatttattttggatgtttaaccaa 31487824  T
Q  454 ta 455  Q
    ||    
T  31487825 ta 31487826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 359 - 452
Target Start/End: Original strand, 34993148 - 34993241
Alignment:
Q  359 aaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatca 452  Q
    ||||||||||||| ||||||||||||||| |||  || ||| ||| ||||||||||||||||||||||| ||||||  ||| |||| |||||||    
T  34993148 aaattttgtcttaaaaatataagatgttacttttgataaaataataattacacaactttttcatgaaaacttacttgatttagatgcttaatca 34993241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 353 - 427
Target Start/End: Original strand, 31850762 - 31850836
Alignment:
Q  353 aaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaa 427  Q
    ||||||||||||||||||||||||||||||||||| |||  || ||| |||||||||| || |||||||| ||||    
T  31850762 aaataaaaattttgtcttagaaatataagatgttacttttaataaaataatgattacataattttttcataaaaa 31850836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 354 - 439
Target Start/End: Complemental strand, 8746234 - 8746149
Alignment:
Q  354 aataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttatttt 439  Q
    |||||||||||||||||  |||||||  |||||| |||  |||||| |||||||| ||||||||||||| |||| |||||||||||    
T  8746234 aataaaaattttgtcttgtaaatatagaatgttacttttgatcaaataatgattatacaactttttcataaaaacttacttatttt 8746149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 337 - 455
Target Start/End: Complemental strand, 16685848 - 16685728
Alignment:
Q  337 tggttagggaatcttcaaataaaaattttgtcttagaaatataagatgtta-ttttctatcaaacaatgattacacaacttttt-catgaaaatttactt 434  Q
    |||||| ||||||| | |||| || ||||||||| |||||||||||||||| | ||  |||||  |||||||||||||||||||  || |||| ||||||    
T  16685848 tggttaaggaatctactaatagaagttttgtctttgaaatataagatgttactctttgatcaagtaatgattacacaactttttaaataaaaacttactt 16685749  T
Q  435 attttggatgtttaatcaata 455  Q
    |||||||||| |||| |||||    
T  16685748 attttggatgcttaaccaata 16685728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 337 - 455
Target Start/End: Complemental strand, 17660084 - 17659964
Alignment:
Q  337 tggttagggaatcttcaaataaaaattttgtcttagaaatataagatgtta-ttttctatcaaacaatgattacacaacttttt-catgaaaatttactt 434  Q
    |||||| ||||||| | |||| || ||||||||| |||||||||||||||| | ||  |||||  |||||||||||||||||||  || |||| ||||||    
T  17660084 tggttaaggaatctactaatagaagttttgtctttgaaatataagatgttactctttgatcaagtaatgattacacaactttttaaataaaaacttactt 17659985  T
Q  435 attttggatgtttaatcaata 455  Q
    |||||||||| |||| |||||    
T  17659984 attttggatgcttaaccaata 17659964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 375 - 484
Target Start/End: Complemental strand, 30028041 - 30027931
Alignment:
Q  375 atataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatcaataccc-tagaacactagttag 473  Q
    ||||||||||||| |||  || ||  |||||| |||||||||||||||||||  |||||| || ||||||||||| || ||||| ||  ||||| |||||    
T  30028041 atataagatgttacttttgataaagtaatgatcacacaactttttcatgaaatcttacttgttatggatgtttaaccattacccttatgacactggttag 30027942  T
Q  474 cattctcctac 484  Q
    |||||||||||    
T  30027941 cattctcctac 30027931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 312 - 449
Target Start/End: Complemental strand, 43118946 - 43118809
Alignment:
Q  312 ttgttaaccagtgcctttaaagcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacac 411  Q
    ||||||||| ||||||  |  |||||||||| | ||||| |||||| ||||||||||||  |||||| ||||||||  ||  |||||| | | ||||| |    
T  43118946 ttgttaaccggtgcctccagggcaatggttaagaaatctacaaatataaattttgtcttgaaaatatgagatgttacatttgatcaaatagtaattacgc 43118847  T
Q  412 aactttttcatgaaaatttacttattttggatgtttaa 449  Q
    || |||||||| |||| |||||| ||||||||| ||||    
T  43118846 aattttttcattaaaacttacttgttttggatgattaa 43118809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 333 - 388
Target Start/End: Original strand, 34993092 - 34993147
Alignment:
Q  333 gcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttat 388  Q
    |||||||||| ||||||| |||||| ||||||||||||  ||||||||||||||||    
T  34993092 gcaatggttaaggaatctacaaatataaattttgtcttgaaaatataagatgttat 34993147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 387
Target Start/End: Original strand, 1554025 - 1554067
Alignment:
Q  345 gaatcttcaaataaaaattttgtcttagaaatataagatgtta 387  Q
    |||||| ||||||||||| ||||||||||||||||||||||||    
T  1554025 gaatctacaaataaaaatgttgtcttagaaatataagatgtta 1554067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 337 - 481
Target Start/End: Complemental strand, 19677110 - 19676965
Alignment:
Q  337 tggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttat 436  Q
    |||||| ||||||  |||||| ||||||||||||  ||||||||||||||| |||  || ||  |||||||||||| ||||| ||  |||| || ||| |    
T  19677110 tggttaaggaatcgacaaatagaaattttgtcttgaaaatataagatgttacttttgattaagtaatgattacacaccttttacaccaaaacttgcttgt 19677011  T
Q  437 tttggatgtttaatcaataccc-tagaacactagttagcattctcc 481  Q
    || ||||| |||| |||| ||| | |  ||||||||||||||||||    
T  19677010 ttaggatgcttaaccaatgcccttggggcactagttagcattctcc 19676965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 444
Target Start/End: Original strand, 25530541 - 25530650
Alignment:
Q  335 aatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttactt 434  Q
    ||||||||  |||| || ||||| ||||||| |||||||||||||| ||||||  ||  || ||  ||||||||||||| |||||||| |||| ||| ||    
T  25530541 aatggttaaagaatttttaaatagaaattttatcttagaaatataaaatgttacatttgataaagtaatgattacacaattttttcataaaaacttattt 25530640  T
Q  435 attttggatg 444  Q
     |||||||||    
T  25530641 gttttggatg 25530650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 449
Target Start/End: Original strand, 1521261 - 1521311
Alignment:
Q  399 acaatgattacacaactttttcatgaaaatttacttattttggatgtttaa 449  Q
    ||||||||||| ||| ||||||||| ||| |||||| ||||||||||||||    
T  1521261 acaatgattacgcaattttttcatggaaacttacttgttttggatgtttaa 1521311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 353 - 483
Target Start/End: Original strand, 12810161 - 12810291
Alignment:
Q  353 aaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatca 452  Q
    |||| |||||||||||||| ||||||||||| ||| |||  |  ||  ||| ||||||||||||||||||||||   | ||| |||| ||||||||| ||    
T  12810161 aaatgaaaattttgtcttaaaaatataagatattacttttgacaaagtaataattacacaactttttcatgaaagcatgcttgttttagatgtttaacca 12810260  T
Q  453 ataccctagaacactagttagcattctccta 483  Q
     | |||| | ||||  |||| ||||||||||    
T  12810261 ttgcccttggacaccggttaacattctccta 12810291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 335 - 449
Target Start/End: Complemental strand, 42888420 - 42888306
Alignment:
Q  335 aatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttactt 434  Q
    |||||||| ||||||| ||||||||  ||||  |||  ||||||||||||||  |||  || ||  ||||||| ||||| ||||  ||||||| ||||||    
T  42888420 aatggttaaggaatctacaaataaattttttaacttgaaaatataagatgttgcttttgataaagtaatgattgcacaaattttctatgaaaacttactt 42888321  T
Q  435 attttggatgtttaa 449  Q
    ||||| |||||||||    
T  42888320 attttagatgtttaa 42888306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Original strand, 22931924 - 22931973
Alignment:
Q  405 attacacaactttttcatgaaaatttacttattttggatgtttaatcaat 454  Q
    ||||||| |||||||  |||||||||||||||||||| ||||||| ||||    
T  22931924 attacactactttttattgaaaatttacttattttggttgtttaaccaat 22931973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 449
Target Start/End: Complemental strand, 27235349 - 27235256
Alignment:
Q  356 taaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaa 449  Q
    ||||||||||||||| |||||||||  ||||||||| ||  ||| ||||||||||  | ||||   |||||| || ||| ||||||||||||||    
T  27235349 taaaaattttgtcttggaaatataaagtgttattttttactaaataatgattacatcatttttgtgtgaaaactttcttgttttggatgtttaa 27235256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 373 - 437
Target Start/End: Original strand, 23080659 - 23080723
Alignment:
Q  373 aaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttatt 437  Q
    ||||||||||||||| |||  |||||  |||||||||| || |||||||| |||||||| |||||    
T  23080659 aaatataagatgttacttttgatcaagtaatgattacataattttttcataaaaatttatttatt 23080723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 334 - 454
Target Start/End: Complemental strand, 51764 - 51644
Alignment:
Q  334 caatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttact 433  Q
    ||||||||| ||||| | ||||||||| ||||||||| ||||||||| |||||| |||  || ||  |||||||||| || |||||||| |||||||| |    
T  51764 caatggttaaggaatttacaaataaaatttttgtctttgaaatataaaatgttacttttgattaagtaatgattacataattttttcataaaaatttatt 51665  T
Q  434 tattttggatgtttaatcaat 454  Q
    |||||||||||||||| ||||    
T  51664 tattttggatgtttaaccaat 51644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 316 - 419
Target Start/End: Complemental strand, 36668 - 36565
Alignment:
Q  316 taaccagtgcctttaaagcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaact 415  Q
    ||||| |||||||||| | |||| |||  ||||||||||||||||||||||| ||  ||||||||||||||| |||  || ||| |||||||| ||||||    
T  36668 taaccggtgcctttaaggtaatgattaaagaatcttcaaataaaaattttgttttgaaaatataagatgttacttttgattaaataatgattatacaact 36569  T
Q  416 tttt 419  Q
    ||||    
T  36568 tttt 36565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 332 - 482
Target Start/End: Complemental strand, 120789 - 120638
Alignment:
Q  332 agcaatggttagggaatcttcaaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaattta 431  Q
    ||||||||||| ||||||| |||||| ||||||||||||  ||||||||||||| | |||   | ||  || |||| |||||||||| ||  |||| |||    
T  120789 agcaatggttaaggaatctacaaatagaaattttgtcttgaaaatataagatgtcacttttggtaaagtaacgattgcacaacttttccacaaaaactta 120690  T
Q  432 cttattttggatgtttaatcaata-ccctagaacactagttagcattctcct 482  Q
    |||||||||||||||||| || || || ||||||||| |||| |||| ||||    
T  120689 cttattttggatgtttaaccattatccttagaacactggttaacattgtcct 120638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 353 - 458
Target Start/End: Original strand, 15380 - 15485
Alignment:
Q  353 aaataaaaattttgtcttagaaatataagatgttattttctatcaaacaatgattacacaactttttcatgaaaatttacttattttggatgtttaatca 452  Q
    ||||| || |||||||||  ||||||||||||||| |||  | |||  || ||||| |||  |||||||| |||| |||||||||||| |||||||| ||    
T  15380 aaatagaatttttgtcttgaaaatataagatgttacttttgaccaagtaacgattatacacatttttcataaaaacttacttattttgaatgtttaacca 15479  T
Q  453 ataccc 458  Q
    ||||||    
T  15480 ataccc 15485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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