View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1508_low_20 (Length: 332)
Name: NF1508_low_20
Description: NF1508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1508_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 6954243 - 6953939
Alignment:
| Q |
18 |
gtaatgagtaacagatttgaagtcaaagcatcaataattcacaatgaaaaccacnnnnnnnnnnnnnnnnnnntgaattaaggaaactttttcaatttgg |
117 |
Q |
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| T |
6954243 |
gtaatgagtaacagatttgaagtcaaagcatcaataattcacaatgaaaaccacaaaaagaagaaagaaaaagtgaattaaggaaactttttcaatttgg |
6954144 |
T |
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| Q |
118 |
ttagttttgctaacctctaatagaaactctgatctattgagcttcaaaagatatagaagtgcaaataaatcatcagtatcaacatctgtatccaaaagaa |
217 |
Q |
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| T |
6954143 |
ttagttttgctaacctctaatagaaactctgatctattgagcttcaaaagatatagaagtgcaaataaatcatcagtatcaacatctgtatccaaaagaa |
6954044 |
T |
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| Q |
218 |
tcctttgaggctttccttcaactatattcaaagaagctccaaaaatttctgatatgatcaacacaaaagctagcatccaaaacctcattgaaaacattat |
317 |
Q |
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| T |
6954043 |
tcctttgaggctttccttcaactatattcaaagaagctccaaaaatttctgatatgatcaacacaaaagctagcatccaaaacctcattgaaaacattat |
6953944 |
T |
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| Q |
318 |
ctgtg |
322 |
Q |
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||||| |
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| T |
6953943 |
ctgtg |
6953939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 108 - 320
Target Start/End: Complemental strand, 6963709 - 6963492
Alignment:
| Q |
108 |
ttcaatttggttagttttgctaacctctaatagaaactctgatctattgagcttcaaaagatatagaagtgcaaataaatcatcagtatcaacatctgta |
207 |
Q |
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| T |
6963709 |
ttcaatttggtttgttttgctaacctctaattgaaattctaatctattgagcttcaaaagatatagcaatgcaaataaatcatcagtatcaacatctgta |
6963610 |
T |
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| Q |
208 |
tccaaaagaatcctttgaggctttccttcaactatattcaaagaagctccaaaaatttctgatat-----gatcaacacaaaagctagcatccaaaacct |
302 |
Q |
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| T |
6963609 |
tccaaaagaatcctttgaggctttccttcaactatattcaaagaagctccaaaaatttctgatatgatctgatcaacacaaaagctagcatccaaaacct |
6963510 |
T |
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| Q |
303 |
cattgaaaacattatctg |
320 |
Q |
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| T |
6963509 |
cattgaaaacattctctg |
6963492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 233
Target Start/End: Original strand, 18134631 - 18134710
Alignment:
| Q |
154 |
ttgagcttcaaaagatatagaagtgcaaataaatcatcagtatcaacatctgtatccaaaagaatcctttgaggctttcc |
233 |
Q |
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| T |
18134631 |
ttgagcttaagaagataaagcagagcaaataaatcatcagtatcaacatcagtatccacaacaattcgttgaggctttcc |
18134710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 233
Target Start/End: Original strand, 49121840 - 49121919
Alignment:
| Q |
154 |
ttgagcttcaaaagatatagaagtgcaaataaatcatcagtatcaacatctgtatccaaaagaatcctttgaggctttcc |
233 |
Q |
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| T |
49121840 |
ttgagcttaagaagataaagcagagcaaataaatcatcagtatcaacatcagtatccacaacaattcgttgaggctttcc |
49121919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 49105241 - 49105320
Alignment:
| Q |
130 |
acctctaatagaaactctgatctattgagcttcaaaagatatagaagtgcaaataaatcatcagtatcaacatctgtatc |
209 |
Q |
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||||||||| |||||||||| |||||||||| | ||| || || || ||||||||||| || ||| ||||||||||||| |
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| T |
49105241 |
acctctaattgaaactctgaagtattgagcttgagaaggtagagtagagcaaataaatcgtcggtagcaacatctgtatc |
49105320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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