View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1508_low_21 (Length: 314)
Name: NF1508_low_21
Description: NF1508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1508_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 297
Target Start/End: Original strand, 35071666 - 35071971
Alignment:
| Q |
7 |
tggacatcatcacgtaggtgctttatctaacccgtattaatgcttatgatacacacacgtttcttatttgtaacagcatttcctaatcactaacatacaa |
106 |
Q |
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| T |
35071666 |
tggacatcaacacgtaggtgctttatctaactcgtattaatgcttatgatacacacacgtttcttatttgtaacagcatttcctaatcactaacatacaa |
35071765 |
T |
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| Q |
107 |
aaacaaatagccaaaatggaacatttttggattcaaatttcaa---------------cttttcataattactctcactgtgaactctgattggtcaaac |
191 |
Q |
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| T |
35071766 |
aaacaaatagccaaaatggaacatttttggattcaaatttcaatccacacgaacagaactgttcattattactctcactgtgaactctgattggtcaaac |
35071865 |
T |
|
| Q |
192 |
gatcagggttggtaacctcttccttagggacagtaacagtaagaacaccatcttcaatagaagccttaacctgatccaatttacagttagctggaagagt |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071866 |
gatcagggttggtaacctcttccttagggacagtaacagtaagaacaccatcttcaatagaagccttaacctgatccaatttacagttagctggaagagt |
35071965 |
T |
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| Q |
292 |
aaaact |
297 |
Q |
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|||||| |
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| T |
35071966 |
aaaact |
35071971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 274
Target Start/End: Complemental strand, 34919235 - 34919170
Alignment:
| Q |
209 |
tcttccttagggacagtaacagtaagaacaccatcttcaatagaagccttaacctgatccaattta |
274 |
Q |
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| T |
34919235 |
tcttccttaggaacagtaacagtaagaaccccattctccataccagctttaacctgatccatttta |
34919170 |
T |
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