View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1508_low_23 (Length: 293)
Name: NF1508_low_23
Description: NF1508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1508_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 55269939 - 55269675
Alignment:
| Q |
19 |
aaattatttgaccttgaagcttaaactagctttctgcgcagctctgtcctgttaatggtaaaatatgtttcatgtgtctatgacagattgctgttggtac |
118 |
Q |
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| T |
55269939 |
aaattatatgaccttgaagcttaaactagctttctgcgcagctctgtcctgttaatggtaaaatatgtttcatgtgtctatgacagattgctgttggtac |
55269840 |
T |
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| Q |
119 |
tgatgatgtctacaagagtgctgatgtagtcaacctagtaacgcaagagcttggagggaagatcactcggcaaccagggccaattcccggccttaacaca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55269839 |
tgatgatgtctacaagagtgctgatgtagtcaacctagtaacgcaagagcttggagggaagatcactcggcaaccagggccaattcccggccttaacaca |
55269740 |
T |
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| Q |
219 |
aaagtcgtttcttttttagatccagatggatggaaaactgtaagttcatttttccctttgcttct |
283 |
Q |
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| T |
55269739 |
aaagtcgtttcttttttagatccagatggatggaaaactgtaagttcatttttccctttgcttct |
55269675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 55263075 - 55262830
Alignment:
| Q |
19 |
aaattatttgaccttgaagcttaaactagctttctgcgcagctctgtcctgttaatggtaaaatatgtttcatgtgtctatgacagattgctgttggtac |
118 |
Q |
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| T |
55263075 |
aaattatatgaccttgaagcttaaactagctttcttcgtgtttatgtaccattgatggtaaaatatgtttcatgtgtctataacagattgccattggtac |
55262976 |
T |
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| Q |
119 |
tgatgatgtctacaagagtgctgatgtagtcaacctagtaacgcaagagcttggagggaagatcactcggcaaccagggccaattcccggccttaacaca |
218 |
Q |
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| T |
55262975 |
tgatgatgtctacaagagtgctgatgtagtcaacctagtcacacaagagcttggaggggagatcactctgcaaccagggccaattcctggccttaacaca |
55262876 |
T |
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| Q |
219 |
aaagtcgtttcttttttagatccagatggatggaaaactgtaagtt |
264 |
Q |
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|| ||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
55262875 |
aaggtcacttcctttttagatccagatggatggaaaactgtaagtt |
55262830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 92 - 264
Target Start/End: Complemental strand, 8301029 - 8300857
Alignment:
| Q |
92 |
gtgtctatgacagattgctgttggtactgatgatgtctacaagagtgctgatgtagtcaacctagtaacgcaagagcttggagggaagatcactcggcaa |
191 |
Q |
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|||| ||| |||| |||||||||| || |||||||| ||||||||||| || |||||||||||| || ||||| ||||||||||||| || ||||| |
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| T |
8301029 |
gtgtatataacaggttgctgttggcaccgatgatgtatacaagagtgccgagttagtcaacctagccactcaagaatttggagggaagattaccaggcaa |
8300930 |
T |
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| Q |
192 |
ccagggccaattcccggccttaacacaaaagtcgtttcttttttagatccagatggatggaaaactgtaagtt |
264 |
Q |
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||||||||||| || ||||| |||||||| || |||||| |||||||||||||||||||||||||| |||| |
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| T |
8300929 |
ccagggccaatccctggcctcaacacaaagatcacttctttcttagatccagatggatggaaaactgtgagtt |
8300857 |
T |
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