View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1508_low_26 (Length: 268)
Name: NF1508_low_26
Description: NF1508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1508_low_26 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 20 - 253
Target Start/End: Original strand, 39843611 - 39843843
Alignment:
| Q |
20 |
aaaaatgtgtcagtttaaccgctgattctttgtaaggttgttggtgttaaatttatgcctttttgaattcttctcaaatctttttcctactacaaacttg |
119 |
Q |
| |
|
||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39843611 |
aaaaatgtg-cagtttcaccactgattctttgtaaggttgttggtgttaaatttatgcctttttgaattcttctcaaatctttttcctactacaaacttg |
39843709 |
T |
|
| Q |
120 |
tgaaattcaaaggaattagatagttgtagagttgacagcacacctttgattatttctgttttggaaacaagcttgttgctggtttggaaaatttagaaaa |
219 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39843710 |
tgaaattcaaaggaattagatagttgtggagttgacagcacacctttgattatttctgttttggaaacaagcttgttgctggtttggaaaatttagaaaa |
39843809 |
T |
|
| Q |
220 |
ttcagattatgcagctgagccacctgttcagatg |
253 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||| |
|
|
| T |
39843810 |
ttcagattatgcggctgagccgcctgttcagatg |
39843843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 76 - 177
Target Start/End: Original strand, 49295045 - 49295146
Alignment:
| Q |
76 |
gcctttttgaattcttctcaaatctttttcctactacaaacttgtgaaattcaaaggaattagatagttgtagagttgacagcacacctttgattatttc |
175 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||| ||| ||| | ||||||||||| |||||| ||||||||| |
|
|
| T |
49295045 |
gcctttttgaattctggtcaaatctttctcctactacaaacttgtgaaattcgaaggaattggatggttatggagttgacagcgcaccttagattatttc |
49295144 |
T |
|
| Q |
176 |
tg |
177 |
Q |
| |
|
|| |
|
|
| T |
49295145 |
tg |
49295146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 21715472 - 21715515
Alignment:
| Q |
29 |
tcagtttaaccgctgattctttgtaaggttgttggtgttaaatt |
72 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21715472 |
tcagtttcaccactgattctttgtaaggttgttggtgttaaatt |
21715515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University