View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1508_low_27 (Length: 258)
Name: NF1508_low_27
Description: NF1508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1508_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 1891957 - 1892196
Alignment:
| Q |
1 |
aagcataatatcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaattcttcatcacttcatcaaccagctggctttctcatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1891957 |
aagcataatatcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaattcttcatcacttcatcaaccagctggctttctcatg |
1892056 |
T |
|
| Q |
101 |
gcagcggattcaagttgggcgattggtggcattctgctaacaattgacttctttctgctatcgctacgctacatttttcaggtaggattagtattatgca |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1892057 |
gcagtggattcaagttgggcgattggtggcattctgctaacaattgacttctttctgctatcgctacgctacatttttcaggtaggattagtattatgca |
1892156 |
T |
|
| Q |
201 |
aaatgagagacgttatactttaagaattgaagttcggaaa |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
1892157 |
aaatgagagacgttatactttaagaattgaagttcggaaa |
1892196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 1902887 - 1903035
Alignment:
| Q |
1 |
aagcataatatcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaattcttcatcacttcatcaaccagctggctttctcatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1902887 |
aagcataatatcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaattcttcatcacttcatcaaccagctggctttctcaag |
1902986 |
T |
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| Q |
101 |
gcagcggattcaagttgggcgattggtggcattctgctaacaattgact |
149 |
Q |
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| T |
1902987 |
tcagtggattcaagttgggccattgctggcattctcctaatatttgact |
1903035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 1907120 - 1907268
Alignment:
| Q |
1 |
aagcataatatcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaattcttcatcacttcatcaaccagctggctttctcatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1907120 |
aagcataatatcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaattcttcatcacttcatcaaccagctggctttctcaag |
1907219 |
T |
|
| Q |
101 |
gcagcggattcaagttgggcgattggtggcattctgctaacaattgact |
149 |
Q |
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||| ||||||||||||||| |||| ||||||||| |||| | |||||| |
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| T |
1907220 |
tcagtggattcaagttgggccattgctggcattctcctaatatttgact |
1907268 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 1912779 - 1912994
Alignment:
| Q |
1 |
aagcataatatcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaattcttcatcacttcatcaaccagctggctttctcatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||| |||||||||||||||||| || |||||||| | |
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| T |
1912779 |
aagcataatatcaatagcaggtgcttttgtgttgactttctacaaaggacaatccatcatgaattcctcatcacttcatcaaccaattgactttctcaag |
1912878 |
T |
|
| Q |
101 |
gcagcggattcaagttgggcgattggtggcattctgctaacaattgacttctttctgctatcgctacgctacatttttcaggtaggattagtattatgca |
200 |
Q |
| |
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| | ||||||||||||||| |||| ||| |||||||| |||||||||| |||||| | || ||| | |||||||| |||||||| ||| ||||||||| |
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| T |
1912879 |
tctgtggattcaagttgggccattgctggtattctgctgacaattgactattttctggtttcactatggtacattttacaggtagggttactattatgca |
1912978 |
T |
|
| Q |
201 |
aaatgagagacgttat |
216 |
Q |
| |
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|||||| ||| ||||| |
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|
| T |
1912979 |
aaatgatagatgttat |
1912994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 1879602 - 1879745
Alignment:
| Q |
1 |
aagcataatatcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaattcttcatcacttcatcaaccagctggctttctcatg |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||||||| || ||||||||||| || | |||||||||||||| || |||||||| | |
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| T |
1879602 |
aagcataatctcaatagcaggtgcttttgtgttgactttctacaaaggaccatccatcatgaattcatctttacttcatcaaccagttgactttctcaag |
1879701 |
T |
|
| Q |
101 |
gcagcggattcaagttgggcgattggtggcattctgctaacaat |
144 |
Q |
| |
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||| ||||||||||||||| ||| ||||||||| |||||||| |
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| T |
1879702 |
tcagaggattcaagttgggcttttgctggcattcttctaacaat |
1879745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 1897394 - 1897512
Alignment:
| Q |
1 |
aagcataatatcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaattcttcatcacttcatcaaccagctggctttctcatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||| | |||||||||| ||||||||||||||| || ||||||||||| | |
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| T |
1897394 |
aagcataatatcaatagcaggtgcttttgtgttaactttctacaaaggaccacccatcatgaatttctcatcacttcatcaatcaattggctttctcaag |
1897493 |
T |
|
| Q |
101 |
gcagcggattcaagttggg |
119 |
Q |
| |
|
||| ||||||||||||| |
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|
| T |
1897494 |
tcagtagattcaagttggg |
1897512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 2 - 147
Target Start/End: Original strand, 1886191 - 1886336
Alignment:
| Q |
2 |
agcataatatcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaattcttcatcacttcatcaaccagctggctttctcatgg |
101 |
Q |
| |
|
|||||||| ||||||| ||| ||||||||| ||||||| ||||||||||| || |||||| |||| ||||| |||||||||||| ||||||||||| | |
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| T |
1886191 |
agcataatctcaatagtaggagcttttgtgttgactttttacaaaggaccatccatcatgcattcctcatctcttcatcaaccaattggctttctcaagt |
1886290 |
T |
|
| Q |
102 |
cagcggattcaagttgggcgattggtggcattctgctaacaattga |
147 |
Q |
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||| ||||||||||||| |||| ||||||||| |||||| |||| |
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| T |
1886291 |
cagttgattcaagttgggtcattgctggcattcttctaacagttga |
1886336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 27039637 - 27039545
Alignment:
| Q |
6 |
taatatcaatagcaggtgcttttgtgatgactttctacaaaggaccgtcgatcatgaattcttcatcacttcatcaaccagctggctttctca |
98 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||| || ||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
27039637 |
taatctcaatagcaggtgcttttgtgttgactttctacaaaggaccatccatcatgaattcctcatcacttcatcaaccaattggctttctca |
27039545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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