View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1508_low_33 (Length: 236)

Name: NF1508_low_33
Description: NF1508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1508_low_33
NF1508_low_33
[»] chr3 (4 HSPs)
chr3 (1-188)||(49287652-49287835)
chr3 (1-149)||(49288575-49288723)
chr3 (1-68)||(51421587-51421652)
chr3 (45-149)||(33454866-33454970)
[»] chr7 (3 HSPs)
chr7 (1-149)||(35771161-35771307)
chr7 (4-147)||(35770276-35770419)
chr7 (45-149)||(29060008-29060112)
[»] chr2 (4 HSPs)
chr2 (1-152)||(4386108-4386259)
chr2 (83-144)||(1271236-1271297)
chr2 (41-125)||(4976445-4976529)
chr2 (41-125)||(4994352-4994436)
[»] chr4 (4 HSPs)
chr4 (43-143)||(10421523-10421623)
chr4 (38-110)||(15481074-15481146)
chr4 (43-125)||(15481512-15481594)
chr4 (45-119)||(43079190-43079264)
[»] chr5 (1 HSPs)
chr5 (43-149)||(4554657-4554763)
[»] scaffold0119 (1 HSPs)
scaffold0119 (83-144)||(29940-30001)
[»] chr8 (3 HSPs)
chr8 (41-142)||(43924497-43924598)
chr8 (1-68)||(37562366-37562431)
chr8 (43-150)||(12349966-12350073)
[»] chr1 (3 HSPs)
chr1 (1-68)||(38931385-38931450)
chr1 (103-151)||(38688643-38688691)
chr1 (45-149)||(48834366-48834470)
[»] chr6 (1 HSPs)
chr6 (43-125)||(27763437-27763519)


Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 49287835 - 49287652
Alignment:
Q  1 tgaaggagagtgatggttgtggaagatagtgacaaaattttttggtgttgagagtgtatgataagattatgttctatacttaatctaaccgtttaaatta 100  Q
    |||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  49287835 tgaaggagagtgatggttgtggaagatagtgacaaaaaaatttggtgttgagagtgtatgataagactatgttctatacttaatctaaccgtttaaatta 49287736  T
Q  101 gttttcccatagtggaaaacaactttgcttttccatattaaaccccaccatggatagagttccgatatccctttacccaaaaccttta 188  Q
     |||||||||||| | |||||||||| |||| | |||||||| ||||||    ||||||||||||||||||||| |||||||||||||    
T  49287735 attttcccatagtaggaaacaactttactttcctatattaaatcccacc----atagagttccgatatccctttgcccaaaaccttta 49287652  T

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Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 49288575 - 49288723
Alignment:
Q  1 tgaaggagagtgatggttgtggaagatagtgacaaaattttttggtgttgagagtgtatgataagattatgttctatacttaatctaaccgtttaaatta 100  Q
    |||||||||||||||||||||||||||||||| ||||  ||  ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  49288575 tgaaggagagtgatggttgtggaagatagtgataaaaaattccggtgttgagagtgtatgataagactatgttttatacttaatctaaccgtttaaatta 49288674  T
Q  101 gttttcccatagtggaaaacaactttgcttttccatattaaaccccacc 149  Q
    | |||| ||| |||| | ||||||||||||| ||||| |||||||||||    
T  49288675 gctttctcatggtgggagacaactttgctttcccatactaaaccccacc 49288723  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 51421587 - 51421652
Alignment:
Q  1 tgaaggagagtgatggttgtggaagatagtgacaaaattttttggtgttgagagtgtatgataagatt 68  Q
    |||||||||| |||||| |||||||||||||||||||   | | ||||||||||||||||||||||||    
T  51421587 tgaaggagagagatggtagtggaagatagtgacaaaa--atatagtgttgagagtgtatgataagatt 51421652  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 33454970 - 33454866
Alignment:
Q  45 gtgttgagagtgtatgataagattatgttctatacttaatctaaccgtttaaattagttttcccatagtggaaaacaactttgcttttccatattaaacc 144  Q
    |||||||||||| ||||||| | | |||||| ||||||||||||||||| |||  |  |||| ||| |||| |||||| ||| |||| ||||  ||||||    
T  33454970 gtgttgagagtgcatgataacaatgtgttctttacttaatctaaccgttaaaaaaaactttctcatggtgggaaacaattttcctttcccatgctaaacc 33454871  T
Q  145 ccacc 149  Q
    |||||    
T  33454870 ccacc 33454866  T

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Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 35771161 - 35771307
Alignment:
Q  1 tgaaggagagtgatggttgtggaagatagtgacaaaattttttggtgttgagagtgtatgataagattatgttctatacttaatctaaccgtttaaatta 100  Q
    ||||||||||||||||||||||||  |||||||||||  || ||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||    
T  35771161 tgaaggagagtgatggttgtggaa--tagtgacaaaaaattatggtgttgagagtgtataataagactatgctctatacttaatctaaccgtttaaatta 35771258  T
Q  101 gttttcccatagtggaaaacaactttgcttttccatattaaaccccacc 149  Q
    | |||||||| |||| ||||||||||||||| ||||| |||||||||||    
T  35771259 gctttcccatggtgggaaacaactttgctttcccatactaaaccccacc 35771307  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 35770419 - 35770276
Alignment:
Q  4 aggagagtgatggttgtggaagatagtgacaaaattttttggtgttgagagtgtatgataagattatgttctatacttaatctaaccgtttaaattagtt 103  Q
    ||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||||  |    
T  35770419 aggagagtgatggttgtggaagatagtgacaaaaaattctggtgttgagagtgtatgataagactatattctatatttaatataaccgtttaaattaact 35770320  T
Q  104 ttcccatagtggaaaacaactttgcttttccatattaaacccca 147  Q
    || |||| |||| |||||| ||| ||||  |||| |||||||||    
T  35770319 ttaccatggtgggaaacaattttactttctcatactaaacccca 35770276  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 29060112 - 29060008
Alignment:
Q  45 gtgttgagagtgtatgataagattatgttctatacttaatctaaccgtttaaattagttttcccatagtggaaaacaactttgcttttccatattaaacc 144  Q
    |||||||||||| ||||||| | |||||||| |||||||| |||| ||| |||  |  ||||  || ||||||||||| ||| |||| ||||  ||||||    
T  29060112 gtgttgagagtgcatgataataatatgttctttacttaatttaactgttaaaaaaaactttcttatcgtggaaaacaattttcctttcccatgctaaacc 29060013  T
Q  145 ccacc 149  Q
    |||||    
T  29060012 ccacc 29060008  T

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Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 4386108 - 4386259
Alignment:
Q  1 tgaaggagagtgatggttgtggaagatagtgacaaaattttttggtgttgagagtgtatgataagattatgttctatacttaatctaaccgtttaaatta 100  Q
    |||||||||||||||||||||||||||||||||||||  || | |||||||||||||||||||||| |||| |||||| |||||||||||||||||||||    
T  4386108 tgaaggagagtgatggttgtggaagatagtgacaaaaaattctagtgttgagagtgtatgataagactatgctctatatttaatctaaccgtttaaatta 4386207  T
Q  101 gttttcccatagtggaaaacaactttgcttttccatattaaaccccaccatg 152  Q
    | |||||||| |||| ||||||||||| ||   |||| ||||||||||||||    
T  4386208 gctttcccatggtgggaaacaactttgtttactcatactaaaccccaccatg 4386259  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 1271297 - 1271236
Alignment:
Q  83 atctaaccgtttaaattagttttcccatagtggaaaacaactttgcttttccatattaaacc 144  Q
    ||||||| ||| |||||||||||||||||||||||||||||||| |||| | ||| ||||||    
T  1271297 atctaacggttaaaattagttttcccatagtggaaaacaactttcctttcctatactaaacc 1271236  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 4976445 - 4976529
Alignment:
Q  41 tttggtgttgagagtgtatgataagattatgttctatacttaatctaaccgtttaaattagttttcccatagtggaaaacaactt 125  Q
    |||||||||||| || |||| ||| | |||||||| || || ||||||  ||| ||||||  ||||||||||||| |||||||||    
T  4976445 tttggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaactt 4976529  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 4994352 - 4994436
Alignment:
Q  41 tttggtgttgagagtgtatgataagattatgttctatacttaatctaaccgtttaaattagttttcccatagtggaaaacaactt 125  Q
    |||||||||||| || |||| ||| | |||||||| || || ||||||  ||| ||||||  ||||||||||||| |||||||||    
T  4994352 tttggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaactt 4994436  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 10421523 - 10421623
Alignment:
Q  43 tggtgttgagagtgtatgataagattatgttctatacttaatctaaccgtttaaattagttttcccatagtggaaaacaactttgcttttccatattaaa 142  Q
    |||||||||| || |||||||| | |||||||| || |||||||||| ||  ||||||| |||||||| ||||||||||||||  |||| ||| ||||||    
T  10421523 tggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtggaaaacaacttccctttcccaaattaaa 10421622  T
Q  143 c 143  Q
    |    
T  10421623 c 10421623  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 15481146 - 15481074
Alignment:
Q  38 ttttttggtgttgagagtgtatgataagattatgttctatacttaatctaaccgtttaaattagttttcccat 110  Q
    |||||||||||||||||| |||||||| | |||||||| || |||||||||| ||  ||||||| ||||||||    
T  15481146 ttttttggtgttgagagtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccat 15481074  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 15481512 - 15481594
Alignment:
Q  43 tggtgttgagagtgtatgataagattatgttctatacttaatctaaccgtttaaattagttttcccatagtggaaaacaactt 125  Q
    ||||||||||  | |||||||| | |||||||| || |||||||| | ||  |||||||||||||||| |||| |||||||||    
T  15481512 tggtgttgagtttctatgataaaaatatgttctctatttaatctaccggtcaaaattagttttcccattgtgggaaacaactt 15481594  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 43079264 - 43079190
Alignment:
Q  45 gtgttgagagtgtatgataagattatgttctatacttaatctaaccgtttaaattagttttcccatagtggaaaa 119  Q
    |||||||||||| ||||||||| |||||||| ||||| ||||||  | | ||||||  |||||||| ||||||||    
T  43079264 gtgttgagagtgcatgataagactatgttctttacttgatctaatggataaaattaactttcccattgtggaaaa 43079190  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 149
Target Start/End: Complemental strand, 4554763 - 4554657
Alignment:
Q  43 tggtgttgagagtgtatgataagattatgttctatacttaatctaaccgtttaaattagttttcccatagtggaaaacaactttgcttttccatattaaa 142  Q
    |||||||||| || |||||||| | |||||||| ||||| ||||||  ||  ||||||| |||| ||| ||||||||||| ||| |||| ||||| ||||    
T  4554763 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagctttctcatggtggaaaacaattttcctttcccatactaaa 4554664  T
Q  143 ccccacc 149  Q
    |||||||    
T  4554663 ccccacc 4554657  T

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Target: scaffold0119 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 29940 - 30001
Alignment:
Q  83 atctaaccgtttaaattagttttcccatagtggaaaacaactttgcttttccatattaaacc 144  Q
    ||||||| ||| |||||||||||||||||||||||||||||||| |||| | ||| ||||||    
T  29940 atctaacggttaaaattagttttcccatagtggaaaacaactttcctttcctatactaaacc 30001  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 142
Target Start/End: Complemental strand, 43924598 - 43924497
Alignment:
Q  41 tttggtgttgagagtgtatgataagattatgttctatacttaatctaaccgtttaaattagttttcccatagtggaaaacaactttgcttttccatatta 140  Q
    |||||||||||| || |||||||| | |||||||| || |||||||||| ||  ||||||| |||||||| |||| |||||||||  |||| ||| ||||    
T  43924598 tttggtgttgagtgtttatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaatta 43924499  T
Q  141 aa 142  Q
    ||    
T  43924498 aa 43924497  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 37562431 - 37562366
Alignment:
Q  1 tgaaggagagtgatggttgtggaagatagtgacaaaattttttggtgttgagagtgtatgataagatt 68  Q
    |||||||||| |||||| |||||||||||||||||||   | | ||||||||||||||||||||||||    
T  37562431 tgaaggagagagatggtagtggaagatagtgacaaaa--atatagtgttgagagtgtatgataagatt 37562366  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 150
Target Start/End: Complemental strand, 12350073 - 12349966
Alignment:
Q  43 tggtgttgagagtgtatgataagattatgttctatacttaatctaaccgtttaaattagttttcccatagtggaaaacaactttgcttttccatattaaa 142  Q
    |||||||||| || |||||||| |  ||||||| ||||| ||||||  ||| ||||||||||| |||| |||| |||||||||  |||| ||| ||||||    
T  12350073 tggtgttgagtgtctatgataaaagcatgttctttactttatctaatggttaaaattagtttttccatggtgggaaacaacttccctttcccaaattaaa 12349974  T
Q  143 ccccacca 150  Q
    | ||||||    
T  12349973 cgccacca 12349966  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 38931450 - 38931385
Alignment:
Q  1 tgaaggagagtgatggttgtggaagatagtgacaaaattttttggtgttgagagtgtatgataagatt 68  Q
    |||||||||| |||||| |||||||||||||||||||   | | ||||||||||||||||||||||||    
T  38931450 tgaaggagagagatggtagtggaagatagtgacaaaa--atatagtgttgagagtgtatgataagatt 38931385  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 38688643 - 38688691
Alignment:
Q  103 tttcccatagtggaaaacaactttgcttttccatattaaaccccaccat 151  Q
    ||||||||  ||| |||||||||| |||| |||||||||||||||||||    
T  38688643 tttcccatcatgggaaacaacttttctttcccatattaaaccccaccat 38688691  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 48834470 - 48834366
Alignment:
Q  45 gtgttgagagtgtatgataagattatgttctatacttaatctaaccgtttaaattagttttcccatagtggaaaacaactttgcttttccatattaaacc 144  Q
    ||||| |||||| ||||||| | |||||||| ||||||||||||| ||| |||  |  ||||  || ||||||||||| ||| |||| ||||  ||||||    
T  48834470 gtgttcagagtgcatgataataatatgttctttacttaatctaactgttaaaaaaaactttcttatggtggaaaacaatttttctttcccatgctaaacc 48834371  T
Q  145 ccacc 149  Q
    |||||    
T  48834370 ccacc 48834366  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 27763519 - 27763437
Alignment:
Q  43 tggtgttgagagtgtatgataagattatgttctatacttaatctaaccgtttaaattagttttcccatagtggaaaacaactt 125  Q
    |||||||||| || | |||||| | |||||||| || |||||||||| ||  |||||||||||||| | |||| |||||||||    
T  27763519 tggtgttgagtgtctttgataaaaatatgttctctatttaatctaacggtcaaaattagttttcccttggtgggaaacaactt 27763437  T

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