View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1508_low_36 (Length: 215)
Name: NF1508_low_36
Description: NF1508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1508_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 2358454 - 2358634
Alignment:
| Q |
19 |
aaaaattattctacccttatgtgacttaactcacgtatgtatataacccaacgtaatttaagtcattttaaaatacaaccaatataacttaaatcatgtt |
118 |
Q |
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||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| | ||||||||| || |||||||||||||||||||||||| ||||| |
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| T |
2358454 |
aaaaattattctacc-ttacgtgacttaactcacgtatgtgtataacccaacgtgacttaagtcatattgaaatacaaccaatataacttaaattatgtt |
2358552 |
T |
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| Q |
119 |
tcgaataccgtgagttaactcatgttggtaacaaacatgcnnnnnnntttctttgcatatcaatataacatggtatagtata |
200 |
Q |
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|||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2358553 |
tcgaataccgtgagttaacttatgtcggtaacaaacatgcaaaaaaatttctttgcatatcaatataacatggtatagtata |
2358634 |
T |
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