View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1508_low_4 (Length: 543)
Name: NF1508_low_4
Description: NF1508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1508_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 20 - 530
Target Start/End: Complemental strand, 43194843 - 43194326
Alignment:
| Q |
20 |
aggcttatcgtccaaatcaatgcaattgcacctgacaatgtgaccaagtccttgctagaaagaccaacagcactaaacattgaggtgagtgtattaaggt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43194843 |
aggcttatcgtccaaatcaatgcaattgcacctgacaatgtgaccaagtccttgctggaaagaccaacagcactaaacattgaggtgagtgtattaaggt |
43194744 |
T |
|
| Q |
120 |
ttgaagttggtgctgggatcgcggtgttagcagcagattgactagccgtcttggcgtctcttcttccaagttttacgttccaggttgggccaccaagcta |
219 |
Q |
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||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43194743 |
ttgaagttggtgccgggattgcggtgttagcagcagattgactagccgtcttggcgtctcttcttccaagttttacgttccaggttgggccaccaagcta |
43194644 |
T |
|
| Q |
220 |
tcatgtaaattaaaagaaacacgacaattgcaatattgattaattttcacttaatttacttttgcatgattatacttgcaattgaagtattaattagatt |
319 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43194643 |
tcatgtaaattaaaagaaacacgacagttgaaatattgattaattttcacttaatttacttttgcatgattacacttgcaattgaagtattaattagatt |
43194544 |
T |
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| Q |
320 |
ttgattatttgagtaattaat-------tatatgactacacttacgattgcaacggagtccgcggccgcaatggcaaggatatcagcacatgatacaacg |
412 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
43194543 |
ttgattgtttgagtaattaattcattgatatatgactacacttacgattgcaacggagtccgcggcagcgatggcaaggatatcagcacatgatacaacg |
43194444 |
T |
|
| Q |
413 |
ccaggacatacattctctacagctgtcttaatgttgtcaatgacatcaaatccacgagcagagtttctattcgggtttgcgttcttctctccagtaaagt |
512 |
Q |
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| T |
43194443 |
ccaggacatacattctctacggctgtcttaatgttgtcaatgacatcaaatccacgagcagagtttctattcggatttgcgtttttctctccagtaaagt |
43194344 |
T |
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| Q |
513 |
ttgatgtgtcatctagta |
530 |
Q |
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|||||||||||||||||| |
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| T |
43194343 |
ttgatgtgtcatctagta |
43194326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 49 - 219
Target Start/End: Complemental strand, 43180467 - 43180297
Alignment:
| Q |
49 |
acctgacaatgtgaccaagtccttgctagaaagaccaacagcactaaacattgaggtgagtgtattaaggtttgaagttggtgctgggatcgcggtgtta |
148 |
Q |
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|||||||||||||||||| || ||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||| ||||| || |||||| |
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| T |
43180467 |
acctgacaatgtgaccaaatctttgctagaaagaccaacggcgctaaacattgaggtgagtgtattgaggttggaagttggtgccgggatggcagtgtta |
43180368 |
T |
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| Q |
149 |
gcagcagattgactagccgtcttggcgtctcttcttccaagttttacgttccaggttgggccaccaagcta |
219 |
Q |
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| T |
43180367 |
gcagcggattgactagccgttttagcatctcttcttccaagttttacattccaggttggacctccaagcta |
43180297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 37 - 235
Target Start/End: Complemental strand, 43189331 - 43189133
Alignment:
| Q |
37 |
caatgcaattgcacctgacaatgtgaccaagtccttgctagaaagaccaacagcactaaacattgaggtgagtgtattaaggtttgaagttggtgctggg |
136 |
Q |
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||||| ||||| ||||||||||| ||| ||||||||| | |||||||||||| ||||||||||||||||| |||||||||| ||||||||| |||| |
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| T |
43189331 |
caatggaattgtacctgacaatgcgactaagtccttggtggaaagaccaacattcttaaacattgaggtgagtatattaaggttggaagttggtcttggg |
43189232 |
T |
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| Q |
137 |
atcgcggtgttagcagcagattgactagccgtcttggcgtctcttcttccaagttttacgttccaggttgggccaccaagctatcatgtaaattaaaag |
235 |
Q |
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|| || ||||| ||| ||||||||||||| || |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43189231 |
atggcagtgttcgcatcagattgactagcagttgtggcatctcttcttccaagttttacattccaggttgggccaccaagctatcatgtaaattaaaag |
43189133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 352 - 530
Target Start/End: Complemental strand, 43189050 - 43188872
Alignment:
| Q |
352 |
acttacgattgcaacggagtccgcggccgcaatggcaaggatatcagcacatgatacaacgccaggacatacattctctacagctgtcttaatgttgtca |
451 |
Q |
| |
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|||||| |||||||||||||| | ||| |||||||||||||||||||||||||||||||| || || ||||| |||||||| || ||||| ||||||||| |
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| T |
43189050 |
acttacaattgcaacggagtctgtggcagcaatggcaaggatatcagcacatgatacaactccggggcatacgttctctaccgccgtctttatgttgtca |
43188951 |
T |
|
| Q |
452 |
atgacatcaaatccacgagcagagtttctattcgggtttgcgttcttctctccagtaaagtttgatgtgtcatctagta |
530 |
Q |
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| T |
43188950 |
atgacatcgaatcctcgaacagagttcttattcgggagtgcgttcttctctccggtaaagtttgatgtgtcatctagta |
43188872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 351 - 527
Target Start/End: Complemental strand, 43180222 - 43180046
Alignment:
| Q |
351 |
cacttacgattgcaacggagtccgcggccgcaatggcaaggatatcagcacatgatacaacgccaggacatacattctctacagctgtcttaatgttgtc |
450 |
Q |
| |
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||||||| |||||||| ||||| ||||| |||||||| ||||||||||||||||||||||| || || ||||| |||||||| |||||||| |||||||| |
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| T |
43180222 |
cacttacaattgcaacagagtctgcggcagcaatggctaggatatcagcacatgatacaactccggggcatacgttctctacggctgtctttatgttgtc |
43180123 |
T |
|
| Q |
451 |
aatgacatcaaatccacgagcagagtttctattcgggtttgcgttcttctctccagtaaagtttgatgtgtcatcta |
527 |
Q |
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|||||||||||||||||||| ||||||||||| || ||||| |||||||| || |||||| ||||||||||||||| |
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| T |
43180122 |
gatgacatcaaatccacgagcggagtttctatttggatttgcattcttctcaccggtaaagcttgatgtgtcatcta |
43180046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 218
Target Start/End: Complemental strand, 36190800 - 36190635
Alignment:
| Q |
53 |
gacaatgtgaccaagtccttgctagaaagaccaacagcactaaacattgaggtgagtgtattaaggtttgaagttggtgctgggatcgcggtgttagcag |
152 |
Q |
| |
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||||||| |||||| |||||| | |||||||||| |||| ||||| ||||| ||||| || ||| ||||||| ||||||||||| | |||| |||| |
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| T |
36190800 |
gacaatgcgaccaaatccttggtggaaagaccaagagcattaaaccttgagatgagttggttgaggcttgaagtgggtgctgggatgtcattgtttgcag |
36190701 |
T |
|
| Q |
153 |
cagattgactagccgtcttggcgtctcttcttccaagttttacgttccaggttgggccaccaagct |
218 |
Q |
| |
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| |||| |||||| || | || ||||||||||||||||| || | ||| |||||||| ||||||| |
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| T |
36190700 |
ctgatttactagctgttcttgcatctcttcttccaagtttcacatcccatgttgggcctccaagct |
36190635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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