View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1508_low_5 (Length: 542)
Name: NF1508_low_5
Description: NF1508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1508_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 19 - 532
Target Start/End: Complemental strand, 43962816 - 43962306
Alignment:
| Q |
19 |
aggacattacctcaacgacgtggaaagaagcccatgacatgtcgattccatggatggaggagaggtaggtgagtttttgaagtgcggtggatttggtttg |
118 |
Q |
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| T |
43962816 |
aggacattacctcaacgacgtggaaagaagcccatgacatgtcgattccatggatggaggagagataggtgagtttttgaagtgcggtggatttggtttg |
43962717 |
T |
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| Q |
119 |
tggatcggtggatttgatttcgcgacgaatttcttcgattgatttagagatgaaggatgattctgtaagaagttggagacgcatggatttgatgagatcg |
218 |
Q |
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| T |
43962716 |
tggatcggtggatttgatttcgcgacgaatttcttcgattgatttagagatgaaagatgattctgtgagaagttggagacgcatggatttgatgagatcg |
43962617 |
T |
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| Q |
219 |
tctagggttcgttggaagagattgtccatgattgaagaagatgaagaacccgccattgaagcgagtctcaagaagaaaatgtcaccggtcgtcgtggtgg |
318 |
Q |
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| T |
43962616 |
tctagggttcgttggaagagattgtccatgattgaagaagatgaagaacccgccattgaagcgagtctcaagaagaaaatgtcaccggtcgtcgtggtgg |
43962517 |
T |
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| Q |
319 |
aattctgttgataccttctccgggagaatttagatattgtaatgggctaaagtgtttgtttgggcctacgtaaactaatttaactgtttactaggtggat |
418 |
Q |
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| T |
43962516 |
aattctgttgatac---ctccgggagaatttagatattgtaatgggctaaactgtttgtttgggcctacgtaaactaatttaactgtttactaggtggat |
43962420 |
T |
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| Q |
419 |
tgggttactttttgcaccccttaataagattggtatacattgttccatctttaacctctcattctcgattctacactaacttgagtgttggagttgtgca |
518 |
Q |
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| T |
43962419 |
tgggttactttttgcaccccttaataagattggtatgcattgttccatctttaacctctcattctcgattctacactgacttgagtgttggagtagtgca |
43962320 |
T |
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| Q |
519 |
tcctttgtcctttg |
532 |
Q |
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| T |
43962319 |
tcctttgtcctttg |
43962306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 36 - 295
Target Start/End: Complemental strand, 42886292 - 42886065
Alignment:
| Q |
36 |
acgtggaaagaagcccatgacatgtcgattccatggatggaggagaggtaggtgagtttttgaagtgcggtggatttggtttgtggatcggtggatttga |
135 |
Q |
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| T |
42886292 |
acgtggaaggaagcccatgacatgtcgattccatggatggaggagatgtaggtgagtttttgaagtgtggtggat---------------------ttga |
42886214 |
T |
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| Q |
136 |
tttcgcgacgaatttcttcgattgatttagagatgaaggatgattctgtaagaagttggagacgcatggatttgatgagatcgtctagggttcgttggaa |
235 |
Q |
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| T |
42886213 |
tttcgcggcgaatttcttcgattgattttgagatgaaagatgattatgtgagaagttggagacgcgtggatttgattagatc------------ttggaa |
42886126 |
T |
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| Q |
236 |
gagattgtccatgattgaagaagatgaagaacccgcca-ttgaagcgagtctcaagaagaa |
295 |
Q |
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| T |
42886125 |
gagattatccatgattgaagaagttgaagaacccgccatttgaagcaagtctggagaagaa |
42886065 |
T |
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