View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1508_low_7 (Length: 515)
Name: NF1508_low_7
Description: NF1508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1508_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 31941801 - 31942107
Alignment:
| Q |
1 |
acggagcggttggaaggaatactttgaccaagcgaaagagttgatcgaaacagacgatggacctccgcggtggttttcgccgttggagtccagttcacag |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31941801 |
acggagcggttggaaggaatactttgagcaagcgaaagagttgatcgaaacagacgatggacctccgcggtggttttcgccgttggagtgcagttcacag |
31941900 |
T |
|
| Q |
101 |
tgggataattctcctctcatgctcttcttgcctggtcagtcgtccttctttcttaccagcgcgcggttaaacaaattcaaaatgaa-nnnnnnnnnnatg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| ||| |
|
|
| T |
31941901 |
tgggataattctcctctcatgctcttcttgcctggtcagtagtccttctttcttacca----gcggttaaacaaattc-aaatgaattttttttttgatg |
31941995 |
T |
|
| Q |
200 |
tccggttcgaattcagatcttacgtatattattcattatttctacatgaatttttaacgataagactacttaacttaaagatttagtaattgaat-gact |
298 |
Q |
| |
|
|| | |||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||| |||| |||| ||||||||||||||||||||| | || |
|
|
| T |
31941996 |
tcggattcgaattcagatcttacatatattatttattatttttacatgaatttttaacgataaaactatttaatttaaagatttagtaattgaatagtct |
31942095 |
T |
|
| Q |
299 |
cacccaccctcc |
310 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31942096 |
cacccaccctcc |
31942107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 31956032 - 31956167
Alignment:
| Q |
1 |
acggagcggttggaaggaatactttgaccaagcgaaagagttgatcgaaacagacgatggacctccgcggtggttttcgccgttggagtccagttcacag |
100 |
Q |
| |
|
||||||||||||| | ||||||||||| ||||||||||||||||| ||| |||| |||||| || |||||||||||||||||||||| |||||||||| |
|
|
| T |
31956032 |
acggagcggttgggaagaatactttgagcaagcgaaagagttgattgaagaggacggtggaccgccacggtggttttcgccgttggagtgcagttcacag |
31956131 |
T |
|
| Q |
101 |
tgggataattctcctctcatgctcttcttgcctggt |
136 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
31956132 |
tgggacaattctcctctcatactcttcttgcctggt |
31956167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 377 - 515
Target Start/End: Original strand, 31942164 - 31942300
Alignment:
| Q |
377 |
aaaaattagtttataatatcacttgcaaatttatgtaattaatattttctggnnnnnnnnnnnnngacaaaaatatattcgttaaaagattcacataaaa |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
31942164 |
aaaaattagtttataatatcacttgcaaat--atgtaattaatattttctggtttttattttttttacaaaaatataatcgttaaaagactcacataaaa |
31942261 |
T |
|
| Q |
477 |
tatacgtgtcagaacaatatggaactgtcgggatttgtt |
515 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31942262 |
tatacgtgtcagaacaatgtggaactgtcgggatttgtt |
31942300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 31967908 - 31968039
Alignment:
| Q |
1 |
acggagcggttggaaggaatactttgaccaagcgaaagagttgatcgaaa---cagacgatggacctccgcggtggttttcgccgttggagtccagttca |
97 |
Q |
| |
|
||||| ||||||||||||||| ||||| || ||||| ||||| |||| | | |||| |||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
31967908 |
acggaccggttggaaggaatattttgagcatgcgaaggagtttatcggagttgctgacggtggacctccgcggtggttttcgccgtcggagtgtggttcg |
31968007 |
T |
|
| Q |
98 |
cagtgggataattctcctctcatgctcttctt |
129 |
Q |
| |
|
| || ||||||||||||||| ||||||||||| |
|
|
| T |
31968008 |
cggttggataattctcctcttatgctcttctt |
31968039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 49789548 - 49789512
Alignment:
| Q |
53 |
gacgatggacctccgcggtggttttcgccgttggagt |
89 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
49789548 |
gacggtggacctccgcggtggttatcgccgttggagt |
49789512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University