View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1508_low_9 (Length: 436)
Name: NF1508_low_9
Description: NF1508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1508_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 20 - 431
Target Start/End: Original strand, 7266817 - 7267228
Alignment:
| Q |
20 |
ttattacccatgagggtatgtgttcgggtgggaatttatttataaaggtatagagatgaaaactatagtatctactcaaagaatacttgtcgtcatccct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7266817 |
ttattacccatgagggtatgtgttcgggtgggaatttatttataaaggtatagagatgaaaactatagtatctactcaaagaatacttgtcgtcatccct |
7266916 |
T |
|
| Q |
120 |
aattgtgcgttaacactcctcaattcaaaatgacataatagcatgcttgttgaggaaaaattattgcctttattataacaaaattagttaatttttcttt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7266917 |
aattgtgcgttaacactcctcaattcaaaatgacataatagcatgcttgttgaggaaaaattattgcctttattataacaaaattagttaatttttcttt |
7267016 |
T |
|
| Q |
220 |
tgaggaaaactgaattagttaatgaaaattaagtaaacgactatgaagataatttaaatttatacaaatcgtcacttgaccaatcttattgcaataaatt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7267017 |
tgaggaaaactgaattagttaatgaaaattaagtaaacgactatgaagataatttaaatttatacaaatcgtcacttgaccaatcttattgcaataaatt |
7267116 |
T |
|
| Q |
320 |
aatgaaaagtcatttcaaaaagatttgtggctgatccttaaaaaataaaatcattccgtgacaaannnnnnnnaatctttttcaaatctttactctaaat |
419 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||| |
|
|
| T |
7267117 |
aataaaaagtcatttcaaaaagatttgtggctgatccttaaaaaataaaatcattccgtgacaatttttttttaatcttttttaaatctttattctaaac |
7267216 |
T |
|
| Q |
420 |
cttcatctcact |
431 |
Q |
| |
|
|||||||||||| |
|
|
| T |
7267217 |
cttcatctcact |
7267228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 83 - 427
Target Start/End: Original strand, 7279241 - 7279584
Alignment:
| Q |
83 |
tatagtatctactcaaagaatacttgtcgtcatccctaattgtgcgttaacactcctcaattcaaaatgacataatagcatgcttgttgaggaaaaatta |
182 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7279241 |
tatagtacctactcaaagaatacttgttatcatccctaattgtgcgctaacactcctcaattcaaaatgacataatagcatgcttgttgaggaaaaatta |
7279340 |
T |
|
| Q |
183 |
ttgcctttattataacaaaattagttaatttttcttttgaggaaaactgaattagttaatgaaaattaagtaaacgactatgaagataatttaaatttat |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7279341 |
ttgcctttattataacaaaattagttaattttttttttgaggaaaactgaattagttagtgaaaattaagtaaaagactatgaagataatttaaatttat |
7279440 |
T |
|
| Q |
283 |
acaaatcgtcacttgaccaatcttattgcaataaattaatgaaaagtcatttcaaaaagatttgtggctgatccttaaaaaataaaatcattccgtgaca |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7279441 |
acaaatcgtcacttgaccaatcttattgcaataaattaataaaacgtcatttcaaaaagatttgtggctgatccttaaaaaataaaatcattccgtgac- |
7279539 |
T |
|
| Q |
383 |
aannnnnnnnaatctttttcaaatctttactctaaatcttcatct |
427 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
7279540 |
aattttttttattctttttcaaatctttactctaaatcttcatct |
7279584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University