View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1509-Insertion-10 (Length: 256)

Name: NF1509-Insertion-10
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1509-Insertion-10
NF1509-Insertion-10
[»] chr2 (2 HSPs)
chr2 (77-116)||(3606658-3606697)
chr2 (219-256)||(3604447-3604484)
[»] chr7 (2 HSPs)
chr7 (219-256)||(40739129-40739166)
chr7 (77-115)||(40738996-40739034)
[»] chr6 (2 HSPs)
chr6 (219-256)||(29466334-29466371)
chr6 (77-115)||(29466160-29466198)
[»] chr1 (2 HSPs)
chr1 (219-256)||(6242164-6242201)
chr1 (77-115)||(6242296-6242334)


Alignment Details
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 116
Target Start/End: Complemental strand, 3606697 - 3606658
Alignment:
Q  77 ggttcatcttcctccctccctcatattctttatcatcttc 116  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3606697 ggttcatcttcctccctccctcatattctttatcatcttc 3606658  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 3604484 - 3604447
Alignment:
Q  219 cattatttcgatgcccatttatgaatttccatcttgga 256  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  3604484 cattatttcgatgcccatttatgaatttttatcttgga 3604447  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 219 - 256
Target Start/End: Original strand, 40739129 - 40739166
Alignment:
Q  219 cattatttcgatgcccatttatgaatttccatcttgga 256  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40739129 cattatttcgatgcccatttatgaatttccatcttgga 40739166  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 40738996 - 40739034
Alignment:
Q  77 ggttcatcttcctccctccctcatattctttatcatctt 115  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  40738996 ggttcatcttcctccctccctcatattcttcatcatctt 40739034  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 219 - 256
Target Start/End: Original strand, 29466334 - 29466371
Alignment:
Q  219 cattatttcgatgcccatttatgaatttccatcttgga 256  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29466334 cattatttcgatgcccatttatgaatttccatcttgga 29466371  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 29466160 - 29466198
Alignment:
Q  77 ggttcatcttcctccctccctcatattctttatcatctt 115  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  29466160 ggttcatcttcctccctccctcatattcttcatcatctt 29466198  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 6242201 - 6242164
Alignment:
Q  219 cattatttcgatgcccatttatgaatttccatcttgga 256  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6242201 cattatttcgatgcccatttatgaatttccatcttgga 6242164  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 6242334 - 6242296
Alignment:
Q  77 ggttcatcttcctccctccctcatattctttatcatctt 115  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  6242334 ggttcatcttcctccctccctcatattcttcatcatctt 6242296  T

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