View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1509-Insertion-11 (Length: 236)

Name: NF1509-Insertion-11
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1509-Insertion-11
NF1509-Insertion-11
[»] chr3 (9 HSPs)
chr3 (8-236)||(36327994-36328222)
chr3 (47-230)||(36333872-36334055)
chr3 (120-229)||(36309764-36309872)
chr3 (122-230)||(36321276-36321384)
chr3 (111-230)||(36313859-36313975)
chr3 (121-211)||(30201159-30201249)
chr3 (122-154)||(29751894-29751926)
chr3 (120-154)||(30223140-30223174)
chr3 (120-152)||(30227393-30227425)
[»] chr5 (1 HSPs)
chr5 (131-229)||(16053597-16053695)
[»] chr1 (1 HSPs)
chr1 (113-155)||(16955661-16955703)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 36327994 - 36328222
Alignment:
Q  8 aatatatatgtcttcgagatgactgctacttcttttgacagcattgcaacatatctttgccaaatccacgtaagcactgggtgaattacgtgtgcagcgc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36327994 aatatatatgtcttcgagatgactgctacttcttttgacagcattgcaacatatctttgccaaatccacataagcactgggtgaattacgtgtgcagcgc 36328093  T
Q  108 atacgaatagttcgccacatgagaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctct 207  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36328094 atacgaatagttcgccacatgacaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctct 36328193  T
Q  208 gaagggtgtttgctgtcaaatcaatcgga 236  Q
    ||||| |||||||||||||||||||||||    
T  36328194 gaaggatgtttgctgtcaaatcaatcgga 36328222  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 47 - 230
Target Start/End: Original strand, 36333872 - 36334055
Alignment:
Q  47 agcattgcaacatatctttgccaaatccacgtaagcactgggtgaattacgtgtgcagcgcatacgaatagttcgccacatgagaggatccttgcaaacg 146  Q
    |||| ||||||| |||||   ||||||||| ||||||  ||||||  ||||  || ||| ||| |||||||| ||||||||||||||||||||||||| |    
T  36333872 agcaatgcaacaaatcttccacaaatccacataagcatagggtgatatacggatgtagcacatgcgaatagtgcgccacatgagaggatccttgcaaatg 36333971  T
Q  147 ttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaagggtgtttgctgtcaaatca 230  Q
    ||||||||||| ||  |||||||||| |||||| ||| |||||| ||||||||||||||||||||| |||||||||||||||||    
T  36333972 ttccaccattgtggacacactcggcaagcactcgtcacaatttccaacgtaccaagcctctgaaggatgtttgctgtcaaatca 36334055  T

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Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 120 - 229
Target Start/End: Original strand, 36309764 - 36309872
Alignment:
Q  120 cgccacatgagaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaagggtgtttg 219  Q
    |||||||| |||||||||||||||| |||||||||||||||  ||||||| ||||||||| ||| ||||||||||| ||||||||| |||||| ||||||    
T  36309764 cgccacattagaggatccttgcaaatgttccaccattgcggacacactcg-catgcactcgtcacaatttcaaacgcaccaagcctatgaaggatgtttg 36309862  T
Q  220 ctgtcaaatc 229  Q
    ||||||||||    
T  36309863 ctgtcaaatc 36309872  T

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Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 230
Target Start/End: Original strand, 36321276 - 36321384
Alignment:
Q  122 ccacatgagaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaagggtgtttgct 221  Q
    ||||||||| ||||||||||||| |||| ||||||| ||| | |||||||| |||||| ||| |||||||||||||||||||||||||||| ||||| ||    
T  36321276 ccacatgagtggatccttgcaaatgttcaaccattgtgggcatactcggcaagcactcgtcacaatttcaaacgtaccaagcctctgaaggatgttttct 36321375  T
Q  222 gtcaaatca 230  Q
    |||||||||    
T  36321376 gtcaaatca 36321384  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 111 - 230
Target Start/End: Original strand, 36313859 - 36313975
Alignment:
Q  111 cgaatagttcgccacatgagaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaa 210  Q
    |||||||| |||||||||||||||||||||||||  ||| ||||||| | | | || |  ||||||||| ||| ||||||||   |||||||||||||||    
T  36313859 cgaatagtgcgccacatgagaggatccttgcaaatcttcaaccattgagtgcatacacaacatgcactcgtcacaatttcaa---taccaagcctctgaa 36313955  T
Q  211 gggtgtttgctgtcaaatca 230  Q
    |  ||||| |||||||||||    
T  36313956 gaatgttttctgtcaaatca 36313975  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 211
Target Start/End: Complemental strand, 30201249 - 30201159
Alignment:
Q  121 gccacatgagaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaag 211  Q
    |||||||||||||||||||||||| |||||||||| | ||  ||||| | ||||||||  ||| ||||||||  |||| |||||| |||||    
T  30201249 gccacatgagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgtcacaatttcaatggtactaagcctttgaag 30201159  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 29751926 - 29751894
Alignment:
Q  122 ccacatgagaggatccttgcaaacgttccacca 154  Q
    |||||||||||||||||||||||||||||||||    
T  29751926 ccacatgagaggatccttgcaaacgttccacca 29751894  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 154
Target Start/End: Complemental strand, 30223174 - 30223140
Alignment:
Q  120 cgccacatgagaggatccttgcaaacgttccacca 154  Q
    ||||||||||||||||||||||||| |||||||||    
T  30223174 cgccacatgagaggatccttgcaaatgttccacca 30223140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 30227425 - 30227393
Alignment:
Q  120 cgccacatgagaggatccttgcaaacgttccac 152  Q
    ||||||||||||||||||||||||| |||||||    
T  30227425 cgccacatgagaggatccttgcaaatgttccac 30227393  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 16053597 - 16053695
Alignment:
Q  131 aggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaagggtgtttgctgtcaaatc 229  Q
    |||||||||||||| |||||||||  | ||| |||||| |||||||||  | | ||||||||| | |||||||||||||||| | |||| |||||||||    
T  16053597 aggatccttgcaaatgttccaccaaagagggcacactccgcatgcacttgttaaaatttcaaatgcaccaagcctctgaaggatatttgatgtcaaatc 16053695  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 16955661 - 16955703
Alignment:
Q  113 aatagttcgccacatgagaggatccttgcaaacgttccaccat 155  Q
    |||||| |||||||||||||||||||||||||  |||||||||    
T  16955661 aatagtgcgccacatgagaggatccttgcaaatattccaccat 16955703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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