View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1509-Insertion-15 (Length: 127)
Name: NF1509-Insertion-15
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509-Insertion-15 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 2e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 27929332 - 27929213
Alignment:
| Q |
8 |
cagagataggcgagaaataaattcaaaaagcgacaaagtttaggccaattaacgggacttgcaaaaagaaaacaattgagcaaaaataaatgtttaaaga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27929332 |
cagagataggcgagaaataaattcaaaaagcgacaaagtttaggccaaataacgggacttgcaaaaagaaaacaattgagcaaaaataaatgtttaaaga |
27929233 |
T |
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| Q |
108 |
aagaataattgtctctgata |
127 |
Q |
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|||||||||||||||||||| |
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| T |
27929232 |
aagaataattgtctctgata |
27929213 |
T |
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Target: chr5; HSP #2
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 28082505 - 28082624
Alignment:
| Q |
8 |
cagagataggcgagaaataaattcaaaaagcgacaaagtttaggccaattaacgggacttgcaaaaagaaaacaattgagcaaaaataaatgtttaaaga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28082505 |
cagagataggcgagaaataaattcaaaaagcgacaaagtttaggccaaataatgggacttgcaaaaagaaaacaattgagcaaaaagaaatgtttaaaga |
28082604 |
T |
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| Q |
108 |
aagaataattgtctctgata |
127 |
Q |
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|||||||||||||||||||| |
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| T |
28082605 |
aagaataattgtctctgata |
28082624 |
T |
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