View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1509-Insertion-17 (Length: 124)

Name: NF1509-Insertion-17
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1509-Insertion-17
NF1509-Insertion-17
[»] chr2 (11 HSPs)
chr2 (7-124)||(32118427-32118545)
chr2 (43-124)||(32147555-32147636)
chr2 (43-118)||(2821423-2821498)
chr2 (43-118)||(32182189-32182264)
chr2 (43-124)||(32152316-32152397)
chr2 (43-124)||(32174160-32174241)
chr2 (71-122)||(32212256-32212307)
chr2 (43-105)||(32534153-32534215)
chr2 (43-119)||(32156384-32156460)
chr2 (71-124)||(32207179-32207232)
chr2 (84-123)||(2821375-2821414)


Alignment Details
Target: chr2 (Bit Score: 103; Significance: 1e-51; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 32118427 - 32118545
Alignment:
Q  7 agtatctacttagaatagcttacagtttatagggagccaaacatgacctatatattttctctatctagttcatgttcttctttgatattttcttcattct 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32118427 agtatctacttagaatagcttacagtttatagggagccaaacatgacctatatattttctctatctagttcatgttcttctttgatattttcttcattct 32118526  T
Q  107 -taatctcttccttcatca 124  Q
     | ||||||||||| ||||    
T  32118527 atcatctcttccttgatca 32118545  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 32147555 - 32147636
Alignment:
Q  43 ccaaacatgacctatatattttctctatctagttcatgttcttctttgatattttcttcattcttaatctcttccttcatca 124  Q
    ||||||||| ||||||||||||||||| ||||||||  |||||||||| ||||||||||| |||| ||||||||||| ||||    
T  32147555 ccaaacatggcctatatattttctctacctagttcaccttcttctttgttattttcttcaatctttatctcttccttgatca 32147636  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 2821498 - 2821423
Alignment:
Q  43 ccaaacatgacctatatattttctctatctagttcatgttcttctttgatattttcttcattcttaatctcttcct 118  Q
    ||||||||| ||||||||||||||||| ||||||||  |||||||| |||||||||||||||||| ||||| ||||    
T  2821498 ccaaacatggcctatatattttctctacctagttcagattcttcttggatattttcttcattctttatctcatcct 2821423  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 32182189 - 32182264
Alignment:
Q  43 ccaaacatgacctatatattttctctatctagttcatgttcttctttgatattttcttcattcttaatctcttcct 118  Q
    |||||||| |||||||||||||| ||| ||||||||  |||||||||||||||||||||||||||  |||||||||    
T  32182189 ccaaacataacctatatattttcactacctagttcaccttcttctttgatattttcttcattctttgtctcttcct 32182264  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 32152316 - 32152397
Alignment:
Q  43 ccaaacatgacctatatattttctctatctagttcatgttcttctttgatattttcttcattcttaatctcttccttcatca 124  Q
    ||||||||  |||||||||||||||||  ||||||||||||| |||||||| |||||||||| ||||| |||||||| ||||    
T  32152316 ccaaacatagcctatatattttctctacatagttcatgttctcctttgataatttcttcatttttaatgtcttccttgatca 32152397  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 32174160 - 32174241
Alignment:
Q  43 ccaaacatgacctatatattttctctatctagttcatgttcttctttgatattttcttcattcttaatctcttccttcatca 124  Q
    ||||||||||||||||||||||||||| ||||||||  ||||||||| || ||||||||||| || | ||||||||| ||||    
T  32174160 ccaaacatgacctatatattttctctacctagttcaccttcttctttaatgttttcttcattttttacctcttccttgatca 32174241  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 32212307 - 32212256
Alignment:
Q  71 ctagttcatgttcttctttgatattttcttcattcttaatctcttccttcat 122  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  32212307 ctagttcatgttcttctttgatattttcttcattttttatctcttccttcat 32212256  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 32534153 - 32534215
Alignment:
Q  43 ccaaacatgacctatatattttctctatctagttcatgttcttctttgatattttcttcattc 105  Q
    ||||||||| ||||||||||||||||| ||| ||||  |||||||||||||||||||||||||    
T  32534153 ccaaacatggcctatatattttctctacctaattcaccttcttctttgatattttcttcattc 32534215  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 32156384 - 32156460
Alignment:
Q  43 ccaaacatgacctatatattttctctatctagttcatgttcttctttgatattttcttcattcttaatctcttcctt 119  Q
    ||||||||| ||||||||||||| ||  ||||||||  ||||||||||| ||||||||| ||||| |||||||||||    
T  32156384 ccaaacatggcctatatattttcactccctagttcagattcttctttgacattttcttccttctttatctcttcctt 32156460  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 32207232 - 32207179
Alignment:
Q  71 ctagttcatgttcttctttgatattttcttcattcttaatctcttccttcatca 124  Q
    ||||||||||||||||||||| |||||||||||| ||||| |||||||| ||||    
T  32207232 ctagttcatgttcttctttgacattttcttcattattaatgtcttccttgatca 32207179  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 2821414 - 2821375
Alignment:
Q  84 ttctttgatattttcttcattcttaatctcttccttcatc 123  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  2821414 ttctttgatgttttcttcattctttatctcttccttcatc 2821375  T

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