View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1509-Insertion-18 (Length: 93)
Name: NF1509-Insertion-18
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509-Insertion-18 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 78; Significance: 6e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 6e-37
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 2709463 - 2709544
Alignment:
| Q |
12 |
caggtgctaataaatcctttagcatgtcaactcctaaacctccgacttctaacaaaagagttttgaagtttgattgtatttt |
93 |
Q |
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| T |
2709463 |
caggtgctaataaatcctttagcatgtcaactcctaaacctccgacttctaacaaaagagtttagaagtttgattgtatttt |
2709544 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 20143836 - 20143779
Alignment:
| Q |
35 |
atgtcaactcctaaacctccgacttctaacaaaagagttttgaagtttgattgtattt |
92 |
Q |
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| T |
20143836 |
atgtcaactcccaaaccaccagcttctaacaaaagagtttccaagtttgattgcattt |
20143779 |
T |
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