View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1509-Insertion-2 (Length: 719)

Name: NF1509-Insertion-2
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1509-Insertion-2
NF1509-Insertion-2
[»] chr1 (11 HSPs)
chr1 (8-719)||(49547206-49547900)
chr1 (443-609)||(47872526-47872682)
chr1 (479-601)||(33857205-33857328)
chr1 (479-601)||(33923595-33923718)
chr1 (555-616)||(44261669-44261730)
chr1 (273-325)||(33856891-33856943)
chr1 (273-325)||(33923980-33924032)
chr1 (273-341)||(45191217-45191285)
chr1 (324-392)||(49444123-49444191)
chr1 (333-379)||(44261863-44261909)
chr1 (9-87)||(45191178-45191256)
[»] chr3 (3 HSPs)
chr3 (56-372)||(14961270-14961593)
chr3 (280-325)||(14961269-14961314)
chr3 (546-661)||(14961756-14961874)
[»] chr4 (2 HSPs)
chr4 (573-616)||(55771061-55771104)
chr4 (573-616)||(55835295-55835338)


Alignment Details
Target: chr1 (Bit Score: 514; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 8 - 719
Target Start/End: Complemental strand, 49547900 - 49547206
Alignment:
Q  8 gtcaaagcaagagtgaagaggctgtttaaaggtaactcgaatttaatgttgggattcaatttcttcctgccaaaggaacac-gaattcaaactttcatat 106  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  49547900 gtcaaagcaagagtgaagaggctgtttaaagggaactcgaatttaatgttgggattcaattccttcctgccaaaggaacacagaattcaaactttcatat 49547801  T
Q  107 cattagggtttaaagatgcatcaccgcttcttaaggcaataaaagttgcattt-aagataagagggaaagttattatgagtttttaaaagtcctgcaagg 205  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||    
T  49547800 cattaaggtttaaagatgcatcaccgcttcttaaggcaataaaagttgcatttcaagataagagggaaagttattatgagttttcaaaagtcctacaagg 49547701  T
Q  206 tttcaaggataaaagaattgattcaaaaggtactgcagctagagtgaagaagctgcttaaagggtagatttaattttgggattcaacaccttactaccaa 305  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  49547700 tttcaaggataaaagaattgattcaaaagatactgcagctagagtgaagaagctgcttaaagggcagatttaattttgggattcaacaccttactgccaa 49547601  T
Q  306 aggaacatcaaatcaaacttgagaccactggttagtggtttatgattattgattgcacttctcatattttcatacttttctgcagttattatgaccnnnn 405  Q
    ||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  49547600 aggaacatcaaa------------------gttagtggtttatgattattgattgcacttctcatattttcatacttttctgcagttattatga----tt 49547523  T
Q  406 nnnnnnnnngctgtatatatatttctact---gtttgtggtaatttagagactaatttgatcaagctttgtgcaattaattgatggattaagttgggtca 502  Q
              |||||||||||||||||||   || || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  49547522 tttttttttactgtatatatatttctactactgtatgcggtaatttagagactaatttgatcaaactttgtgcaattaattgatggattaagttgggtca 49547423  T
Q  503 ctctgcactgttggagaactaaactgatgagtgatgatagaattttttcacgtaatgaactaatgtagtctatatctttggagtattaaaataggggtta 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  49547422 ctctgcactgttggagaactaaactgatgagtgatgatagaattttttcacgtaatgaactaatgtagtttatatctttggagtattaaaataggggtta 49547323  T
Q  603 gaggttcatgcattatatctacttcggaaactaatttccactggtaaaaactgtcttacggccagaaaatattttgaaaacttcacgattgaaaaaacag 702  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49547322 gaggttcatgcattatatctacttcgggaactaatttccacgggtaaaaactgtcttacggccagaaaatattttgaaaacttcacgattgaaaaaacag 49547223  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 443 - 609
Target Start/End: Original strand, 47872526 - 47872682
Alignment:
Q  443 taatttagagactaatttgatcaagctttgtgcaattaattgatggattaagttgggtcactctgcactgttggagaactaaactgatgagtgatgatag 542  Q
    ||||||||||||||||||||| ||  ||||  |||||   ||||||||||||||| | ||||||||| ||||| ||||||| |  |||||       |||    
T  47872526 taatttagagactaatttgatgaaattttgcacaatt---tgatggattaagttgtgacactctgcattgttgaagaactacatcgatga-------tag 47872615  T
Q  543 aattttttcacgtaatgaactaatgtagtctatatctttggagtattaaaataggggttagaggttc 609  Q
    || ||| ||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||    
T  47872616 aaatttgtcatgtaatgaactgatggagtctatatctttggagtattaaaataggggttaggggttc 47872682  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 479 - 601
Target Start/End: Original strand, 33857205 - 33857328
Alignment:
Q  479 taattgatggattaagttgggtcactctgcactgttggagaactaaa-ctgatgagtgatgatagaattttttcacg---taatgaactaatgtagtcta 574  Q
    ||||||||||||||||||| | ||| ||||| ||||| ||||  ||| || ||   ||||||||||||||||||||    ||||||||| ||| ||||||    
T  33857205 taattgatggattaagttgtgacacactgcattgttgaagaagaaaaactaat---tgatgatagaattttttcacacgttaatgaactgatgaagtcta 33857301  T
Q  575 tatctttggagtattaaaataggggtt 601  Q
    |||||||||||||||||||||||||||    
T  33857302 tatctttggagtattaaaataggggtt 33857328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 479 - 601
Target Start/End: Complemental strand, 33923718 - 33923595
Alignment:
Q  479 taattgatggattaagttgggtcactctgcactgttggagaactaaa-ctgatgagtgatgatagaattttttcacg---taatgaactaatgtagtcta 574  Q
    ||||||||||||||||||| | ||| ||||| ||||| ||||  ||| || ||   ||||||||||||||||||||    ||||||||| ||| ||||||    
T  33923718 taattgatggattaagttgtgacacactgcattgttgaagaagaaaaactaat---tgatgatagaattttttcacacgttaatgaactgatgaagtcta 33923622  T
Q  575 tatctttggagtattaaaataggggtt 601  Q
    |||||||||||||||||||||||||||    
T  33923621 tatctttggagtattaaaataggggtt 33923595  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 555 - 616
Target Start/End: Complemental strand, 44261730 - 44261669
Alignment:
Q  555 taatgaactaatgtagtctatatctttggagtattaaaataggggttagaggttcatgcatt 616  Q
    ||||| ||| ||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||    
T  44261730 taatggactgatggagtctttatctttggaggattaaaataggggttaggggttcatgcatt 44261669  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 33856891 - 33856943
Alignment:
Q  273 atttaattttgggattcaacaccttactaccaaaggaacatcaaatcaaactt 325  Q
    ||||||||||||||||||| ||||| || | ||||||||||||||||| ||||    
T  33856891 atttaattttgggattcaataccttcctgcgaaaggaacatcaaatcacactt 33856943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 33924032 - 33923980
Alignment:
Q  273 atttaattttgggattcaacaccttactaccaaaggaacatcaaatcaaactt 325  Q
    ||||||||||||||||||| ||||| || | ||||||||||||||||| ||||    
T  33924032 atttaattttgggattcaataccttcctgcgaaaggaacatcaaatcacactt 33923980  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 273 - 341
Target Start/End: Original strand, 45191217 - 45191285
Alignment:
Q  273 atttaattttgggattcaacaccttactaccaaaggaacatcaaatcaaacttgagaccactggttagt 341  Q
    ||||||||||||| |||||  |||| || ||||||||||||||||||| |||  | |||||||||||||    
T  45191217 atttaattttggggttcaatgccttcctgccaaaggaacatcaaatcacactccacaccactggttagt 45191285  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 324 - 392
Target Start/End: Complemental strand, 49444191 - 49444123
Alignment:
Q  324 ttgagaccactggttagtggtttatgattattgattgcacttctcatattttcatacttttctgcagtt 392  Q
    |||||||||||||||||| |||||| | |||| |||| | ||||||||| || || |||||||||||||    
T  49444191 ttgagaccactggttagtagtttatcactattcattgtaattctcatatcttgatgcttttctgcagtt 49444123  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 333 - 379
Target Start/End: Complemental strand, 44261909 - 44261863
Alignment:
Q  333 ctggttagtggtttatgattattgattgcacttctcatattttcata 379  Q
    ||||||||| |||||| |||||| |||||||||||||||| ||||||    
T  44261909 ctggttagtagtttatcattattcattgcacttctcatatgttcata 44261863  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 45191178 - 45191256
Alignment:
Q  9 tcaaagcaagagtgaagaggctgtttaaaggtaactcgaatttaatgttgggattcaatttcttcctgccaaaggaaca 87  Q
    ||||||||| ||||||| ||||| |||||||  |  | |||||||| ||||| ||||||  ||||||||||||||||||    
T  45191178 tcaaagcaatagtgaaggggctgcttaaagggcatgcaaatttaattttggggttcaatgccttcctgccaaaggaaca 45191256  T

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Target: chr3 (Bit Score: 66; Significance: 8e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 56 - 372
Target Start/End: Original strand, 14961270 - 14961593
Alignment:
Q  56 ttgggattcaatttcttcctgccaaaggaacacgaattcaaactttcata---tcattagggtttaaagatgcatcaccgcttcttaaggcaataaaagt 152  Q
    |||||||||||   ||||||||||||||||||  || ||| |||||  ||   | |||||||||||||||||||| | |  ||| ||||||| | |||||    
T  14961270 ttgggattcaacaccttcctgccaaaggaacatcaaatcacactttattagggttattagggtttaaagatgcattagcctttcgtaaggcagtcaaagt 14961369  T
Q  153 tgcattt-aagataagagggaaagttattatgagtttttaaaagtcctgcaaggtttcaaggataaaagaattgattcaaaaggtactgcagctagagtg 251  Q
    ||| ||| ||||||||||||||| |||| |||| |||||||||||| |  ||| |||||||||| |||||||||||  || ||||   || || |||||     
T  14961370 tgcgtttcaagataagagggaaaattataatgactttttaaaagtcataaaagatttcaaggat-aaagaattgatataagaggtgtcgctgcaagagtc 14961468  T
Q  252 aagaagctgcttaaaggg----tagatttaattttgggattcaacaccttactaccaaaggaacatcaaatcaaacttgagaccactggttagtggttta 347  Q
    ||| ||||||||||||||     |||| |||||||||||||||||| ||| || | ||||||| ||  || || ||||  ||| |||||||||| |||||    
T  14961469 aaggagctgcttaaagggcatacagatctaattttgggattcaacatcttcctgcaaaaggaatattgaaccacactttggacgactggttagtagttta 14961568  T
Q  348 tgattattgattgcacttctcatat 372  Q
    |||||||| |||||| ||| |||||    
T  14961569 tgattattcattgcatttcacatat 14961593  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 14961269 - 14961314
Alignment:
Q  280 tttgggattcaacaccttactaccaaaggaacatcaaatcaaactt 325  Q
    |||||||||||||||||| || ||||||||||||||||||| ||||    
T  14961269 tttgggattcaacaccttcctgccaaaggaacatcaaatcacactt 14961314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 661
Target Start/End: Original strand, 14961756 - 14961874
Alignment:
Q  546 tttttcacgtaatgaactaatgtagtctatatctttggagtattaaaataggggttagaggttcatg---cattatatctacttcggaaactaatttcca 642  Q
    ||||||| ||||| |||| ||| | |||| || ||||||| ||||||||| |||| || ||||||||   |||| ||| | ||| |||||||||| ||||    
T  14961756 tttttcatgtaataaactgatggaatctacatatttggagcattaaaatatgggtcaggggttcatgatgcattttatgtccttgggaaactaatgtcca 14961855  T
Q  643 ctggtaaaaactgtcttac 661  Q
    ||| ||| |||||||||||    
T  14961856 ctgataacaactgtcttac 14961874  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 616
Target Start/End: Original strand, 55771061 - 55771104
Alignment:
Q  573 tatatctttggagtattaaaataggggttagaggttcatgcatt 616  Q
    |||||||||||||||||||||||| |||| | ||||||||||||    
T  55771061 tatatctttggagtattaaaatagaggtttggggttcatgcatt 55771104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 616
Target Start/End: Original strand, 55835295 - 55835338
Alignment:
Q  573 tatatctttggagtattaaaataggggttagaggttcatgcatt 616  Q
    |||||||||||||||||||||||| |||| | ||||||||||||    
T  55835295 tatatctttggagtattaaaatagaggtttggggttcatgcatt 55835338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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