View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1509-Insertion-3 (Length: 682)

Name: NF1509-Insertion-3
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1509-Insertion-3
NF1509-Insertion-3
[»] chr5 (9 HSPs)
chr5 (166-385)||(31331333-31331553)
chr5 (454-682)||(31331774-31331999)
chr5 (454-682)||(31380554-31380784)
chr5 (297-449)||(31380225-31380372)
chr5 (7-110)||(31331175-31331278)
chr5 (7-110)||(31379957-31380060)
chr5 (166-249)||(31380115-31380198)
chr5 (451-505)||(31284452-31284506)
chr5 (457-501)||(31317124-31317168)
[»] chr1 (2 HSPs)
chr1 (7-61)||(34011476-34011530)
chr1 (7-63)||(27904614-27904670)
[»] chr3 (2 HSPs)
chr3 (7-62)||(45885650-45885705)
chr3 (19-63)||(611415-611459)
[»] chr7 (3 HSPs)
chr7 (19-62)||(27509381-27509424)
chr7 (7-61)||(8801253-8801307)
chr7 (19-61)||(41556612-41556654)
[»] chr4 (2 HSPs)
chr4 (7-58)||(13781309-13781359)
chr4 (7-62)||(35603396-35603451)
[»] chr2 (4 HSPs)
chr2 (7-62)||(14690199-14690254)
chr2 (19-62)||(41384855-41384898)
chr2 (19-65)||(9192413-9192458)
chr2 (19-63)||(21920150-21920194)
[»] scaffold0014 (1 HSPs)
scaffold0014 (20-61)||(21385-21426)
[»] chr6 (1 HSPs)
chr6 (16-64)||(34352669-34352717)


Alignment Details
Target: chr5 (Bit Score: 149; Significance: 2e-78; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 166 - 385
Target Start/End: Original strand, 31331333 - 31331553
Alignment:
Q  166 actaaaattcattgtttccaaatattagattgattctttgacggtgtgaaagtgtacatgagatagaactaaaaaaatttatga--gtcnnnnnnnnnnn 263  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||               
T  31331333 actaaagttcattgtttccaaatattagattgattctttgatggtgtgaaagtgtacatgagatagaactaaaaaaatttatgatagtcttttttttttt 31331432  T
Q  264 nnngagcaaattatttatgatagttaaataaagggatgtacccaaaaaattaatgaaggatgaataatactgtaagaagcataatattgtaaataccaag 363  Q
       |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31331433 tttgagcaa-ttatttataatagttaaataaagggatgtacccaaaaaattaatgaaggatgaataatactgtaagaagcataatattgtaaataccaag 31331531  T
Q  364 gttaaaattaaggataaaatta 385  Q
    ||||||||||||||||||||||    
T  31331532 gttaaaattaaggataaaatta 31331553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 454 - 682
Target Start/End: Original strand, 31331774 - 31331999
Alignment:
Q  454 atggaaaccttatcttaattctcaagaaagtatctatattattagaggtggtggagctatgataaggattgcacgttagttgtgacacgttacaatannn 553  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  31331774 atggaaaccttatcttaattctcaagaaaatatctatattattagaggtggtggagctatgataaggattgcacgttagttgtgacacgttacaatattt 31331873  T
Q  554 nnnnnaaacattaaaacataaaagattgtgaaagagataggnnnnnnnnnnncaattgaattgactgtgttacaattggattgaccaatatgatgtgaca 653  Q
         ||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||| |||||||||||||||    
T  31331874 tttttaaacattaaaacataaaagattgtgaaagagataggaaaaaaaaa---aattgaattgactgtgttacaattggattgatcaatatgatgtgaca 31331970  T
Q  654 ttcccaacttaacgtcacggacgtgataa 682  Q
    |||||  ||||||||||||||||||||||    
T  31331971 ttcccgccttaacgtcacggacgtgataa 31331999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 454 - 682
Target Start/End: Original strand, 31380554 - 31380784
Alignment:
Q  454 atggaaaccttatcttaattctcaagaaagtatctatattattagaggtggtggagctatga---taaggattgcacgttagttgtgacacgttacaata 550  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||     
T  31380554 atggaaaccttatcttaattctcaagaaaatatctatattattagaggtggtggagctatgatattaaggattgcacgttagttgtgacacgttacaatt 31380653  T
Q  551 nnnnnnnnaaacattaaaacataaaagattgtgaaagagataggnnnnnnnnnnncaattgaattgactgtgttacaattggattgaccaatatgatgtg 650  Q
            ||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||    
T  31380654 ttttttttaaacattaaaacataaaagattgtgaaagagatagg-aaaaaaaaaacaattgaattgactgtgttacaattggattgaccaatatgatgtg 31380752  T
Q  651 acattcccaacttaacgtcacggacgtgataa 682  Q
    ||||||||  ||||||||||||||||||||||    
T  31380753 acattcccgccttaacgtcacggacgtgataa 31380784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 297 - 449
Target Start/End: Original strand, 31380225 - 31380372
Alignment:
Q  297 ggatgtacccaaaaaattaatgaaggatgaataatactgtaagaagcataa-tattgtaaataccaaggttaaaattaaggataaaattagaagaagaac 395  Q
    ||||||||||||||||||||||||||||||||      ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31380225 ggatgtacccaaaaaattaatgaaggatgaat------gtaagaagcataaatattgtaaataccaaggttaaaattaaggataaaattagaagaagaac 31380318  T
Q  396 ggctatacgaaaataatattcttttagctacagcaaaattatgtattcccctat 449  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  31380319 ggctataccaaaataatattcttttagctacagaaaaattatgtattcccctat 31380372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 31331175 - 31331278
Alignment:
Q  7 aaaagtcatcctaaaagagttgaaaaatgttatcttctttatatatagtatagataatagaacaaaagaagatggaaattttgtaaagaaaaaggagatc 106  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31331175 aaaagtcatcctaaaagaattgaaaaatgttattttctttatatatagtatagataatagaacaaaagaagatggaaattttgtaaagaaaaaggagatc 31331274  T
Q  107 atgg 110  Q
    ||||    
T  31331275 atgg 31331278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 31379957 - 31380060
Alignment:
Q  7 aaaagtcatcctaaaagagttgaaaaatgttatcttctttatatatagtatagataatagaacaaaagaagatggaaattttgtaaagaaaaaggagatc 106  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31379957 aaaagtcatcctaaaagagttgaaaaatattattttctttatatatagtatagataatagaacaaaagaagatggaaattttgtaaagaaaaaggagatc 31380056  T
Q  107 atgg 110  Q
    ||||    
T  31380057 atgg 31380060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 31380115 - 31380198
Alignment:
Q  166 actaaaattcattgtttccaaatattagattgattctttgacggtgtgaaagtgtacatgagatagaactaaaaaaatttatga 249  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  31380115 actaaaattcattgtttccaaatattagattgattctttgatggtgtgaaactgtacatgagatagaactaaaaaaatttatga 31380198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 451 - 505
Target Start/End: Original strand, 31284452 - 31284506
Alignment:
Q  451 ttaatggaaaccttatcttaattctcaagaaagtatctatattattagaggtggt 505  Q
    ||||| |||||||||||| ||||||||||||| |||||| |||||||||| ||||    
T  31284452 ttaattgaaaccttatctcaattctcaagaaaatatctaaattattagagttggt 31284506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 457 - 501
Target Start/End: Original strand, 31317124 - 31317168
Alignment:
Q  457 gaaaccttatcttaattctcaagaaagtatctatattattagagg 501  Q
    |||||||||||| ||||||||||||| |||||| |||||||||||    
T  31317124 gaaaccttatctcaattctcaagaaaatatctacattattagagg 31317168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 34011476 - 34011530
Alignment:
Q  7 aaaagtcatcctaaaagagttgaaaaatgttatcttctttatatatagtatagat 61  Q
    |||||||| |||||||||||||||| | ||||| |||||||||||||||||||||    
T  34011476 aaaagtcagcctaaaagagttgaaagaagttattttctttatatatagtatagat 34011530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 27904614 - 27904670
Alignment:
Q  7 aaaagtcatcctaaaagagttgaaaaatgttatcttctttatatatagtatagataa 63  Q
    |||||||| |||||||||| | ||| | ||||| ||||||||| |||||||||||||    
T  27904614 aaaagtcaacctaaaagagctaaaagaggttattttctttatacatagtatagataa 27904670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 45885705 - 45885650
Alignment:
Q  7 aaaagtcatcctaaaagagttgaaaaatgttatcttctttatatatagtatagata 62  Q
    |||||||| || ||||||||||||| ||||||| ||||||||||||| ||||||||    
T  45885705 aaaagtcaacccaaaagagttgaaagatgttattttctttatatataatatagata 45885650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 611459 - 611415
Alignment:
Q  19 aaaagagttgaaaaatgttatcttctttatatatagtatagataa 63  Q
    ||||||| ||||| ||||| | |||||||||||||||||||||||    
T  611459 aaaagagctgaaagatgttgttttctttatatatagtatagataa 611415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 27509424 - 27509381
Alignment:
Q  19 aaaagagttgaaaaatgttatcttctttatatatagtatagata 62  Q
    ||||||||||||| | ||||| ||||||||||||||||||||||    
T  27509424 aaaagagttgaaagacgttattttctttatatatagtatagata 27509381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 8801307 - 8801253
Alignment:
Q  7 aaaagtcatcctaaaagagttgaaaaatgttatcttctttatatatagtatagat 61  Q
    |||||||| || |||| |||||||| | ||||| |||||||||||||||||||||    
T  8801307 aaaagtcagcccaaaaaagttgaaagaagttattttctttatatatagtatagat 8801253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 41556612 - 41556654
Alignment:
Q  19 aaaagagttgaaaaatgttatcttctttatatatagtatagat 61  Q
    |||||||||||||  |||||| |||||||||||||||||||||    
T  41556612 aaaagagttgaaatgtgttattttctttatatatagtatagat 41556654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 13781359 - 13781309
Alignment:
Q  7 aaaagtcatcctaaaagagttgaaaaatgttatcttctttatatatagtata 58  Q
    |||||||| |||||||||||||||| | ||||| ||||||||||||||||||    
T  13781359 aaaagtcaacctaaaagagttgaaaga-gttattttctttatatatagtata 13781309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 35603396 - 35603451
Alignment:
Q  7 aaaagtcatcctaaaagagttgaaaaatgttatcttctttatatatagtatagata 62  Q
    |||||||| || |||||||||| || | ||||| ||||||||||||||||||||||    
T  35603396 aaaagtcagcccaaaagagttggaagaggttattttctttatatatagtatagata 35603451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 14690199 - 14690254
Alignment:
Q  7 aaaagtcatcctaaaagagttgaaaaatgttatcttctttatatatagtatagata 62  Q
    |||||||| ||||||||||  |||| ||||||| ||||||||||||||||| ||||    
T  14690199 aaaagtcagcctaaaagagcggaaacatgttattttctttatatatagtattgata 14690254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 41384855 - 41384898
Alignment:
Q  19 aaaagagttgaaaaatgttatcttctttatatatagtatagata 62  Q
    ||||||| ||||||||||||| |||||| |||||||||||||||    
T  41384855 aaaagagctgaaaaatgttattttctttgtatatagtatagata 41384898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 9192413 - 9192458
Alignment:
Q  19 aaaagagttgaaaaatgttatcttctttatatatagtatagataata 65  Q
    |||||||||||||| |||||| |||||||||||||||||| ||||||    
T  9192413 aaaagagttgaaaa-tgttattttctttatatatagtatatataata 9192458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 21920194 - 21920150
Alignment:
Q  19 aaaagagttgaaaaatgttatcttctttatatatagtatagataa 63  Q
    ||||||||||||| | ||||| |||||||||||||| ||||||||    
T  21920194 aaaagagttgaaagaggttattttctttatatatagaatagataa 21920150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 21385 - 21426
Alignment:
Q  20 aaagagttgaaaaatgttatcttctttatatatagtatagat 61  Q
    |||||| ||||||| ||||| |||||||||||||||||||||    
T  21385 aaagagctgaaaaaagttattttctttatatatagtatagat 21426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 34352669 - 34352717
Alignment:
Q  16 cctaaaagagttgaaaaatgttatcttctttatatatagtatagataat 64  Q
    |||||||||||||||  ||||||| |||||| || ||||||||||||||    
T  34352669 cctaaaagagttgaagtatgttattttctttgtacatagtatagataat 34352717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University