View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1509-Insertion-4 (Length: 612)

Name: NF1509-Insertion-4
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1509-Insertion-4
NF1509-Insertion-4
[»] chr6 (14 HSPs)
chr6 (62-609)||(7564329-7564876)
chr6 (483-610)||(1470922-1471049)
chr6 (483-610)||(1459540-1459667)
chr6 (471-597)||(176272-176398)
chr6 (481-584)||(370782-370885)
chr6 (472-574)||(1442096-1442198)
chr6 (237-306)||(176599-176668)
chr6 (482-578)||(1453838-1453934)
chr6 (482-578)||(1465530-1465626)
chr6 (271-310)||(370569-370608)
chr6 (486-536)||(9819831-9819881)
chr6 (269-310)||(1459314-1459355)
chr6 (486-535)||(9703888-9703937)
chr6 (479-531)||(24417481-24417533)
[»] chr7 (2 HSPs)
chr7 (482-590)||(3927004-3927112)
chr7 (476-536)||(1078152-1078212)
[»] chr4 (2 HSPs)
chr4 (483-575)||(55419742-55419834)
chr4 (481-531)||(22672124-22672174)
[»] scaffold0044 (1 HSPs)
scaffold0044 (474-541)||(89137-89204)
[»] chr2 (8 HSPs)
chr2 (476-525)||(6538844-6538893)
chr2 (482-531)||(7160752-7160801)
chr2 (482-531)||(7168688-7168737)
chr2 (474-531)||(7156182-7156239)
chr2 (474-525)||(7174363-7174414)
chr2 (474-541)||(33026651-33026718)
chr2 (474-544)||(11237684-11237754)
chr2 (483-531)||(36577370-36577418)
[»] chr3 (20 HSPs)
chr3 (481-536)||(2442038-2442093)
chr3 (484-541)||(2456243-2456300)
chr3 (476-541)||(9608336-9608401)
chr3 (483-531)||(3754604-3754652)
chr3 (474-541)||(2631351-2631418)
chr3 (481-531)||(4142131-4142181)
chr3 (481-531)||(4157941-4157991)
chr3 (484-541)||(771499-771556)
chr3 (474-539)||(7324421-7324486)
chr3 (484-539)||(2644362-2644417)
chr3 (474-541)||(9561975-9562042)
chr3 (486-537)||(13498222-13498273)
chr3 (481-531)||(803215-803265)
chr3 (481-531)||(1007465-1007515)
chr3 (481-531)||(1022493-1022543)
chr3 (481-531)||(2696729-2696779)
chr3 (483-531)||(2459279-2459327)
chr3 (488-536)||(2502147-2502195)
chr3 (484-536)||(2659152-2659204)
chr3 (476-536)||(12133096-12133156)
[»] chr5 (4 HSPs)
chr5 (483-531)||(11081817-11081865)
chr5 (481-531)||(23766859-23766909)
chr5 (481-531)||(23816707-23816757)
chr5 (486-539)||(20292991-20293044)
[»] chr1 (1 HSPs)
chr1 (474-535)||(51381445-51381506)


Alignment Details
Target: chr6 (Bit Score: 484; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 62 - 609
Target Start/End: Original strand, 7564329 - 7564876
Alignment:
Q  62 atcaatggaatctgtgaatgcaacaattgggtgattgctaatgctcatagagaatgaaacaatataaattcatgacagtaaataaatattacagagaaca 161  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7564329 atcaatggaatctgtgaatggaacaattgggtgattgctaatgctcatagagaatgaaacaatataaattcatgacagtaaataaatattacagagaaca 7564428  T
Q  162 gtaccaatatgtagaaaaatagcaaaaaactcaaagcaacattaaataaataacacataagacgaaaacacatatggagaatctctgagacccaacatag 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7564429 gtaccaatatgtagaaaaatagcaaaaaactcaaagcaacattaaataaataacacataagacgaaaacacatatggagaatctctgagatccaacatag 7564528  T
Q  262 caaagcgtgtaggtcaaggtgatatgagactctcaacatagacattagacgagaaatcggtaaaagcgacattttgaatccccgaaatctttacggtacc 361  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7564529 caaagcgtgtaggtcaaggtgatacgagactctcaacatagacattagaggagaaatcggtaaaagcgagattttgaatccccgaaatctttacggtacc 7564628  T
Q  362 attcttataattgtaaacatataacttaccacaaaagtcaagcaacacttggtcatcctcctcataaataaaaagcagacgtgcatagaaataatcaatg 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| ||| |||| ||    
T  7564629 attcttataattgtaaacatataacttaccacaaaagtcaagcaacacttggtcatcctcctcatagataaaaagcacaggtgcatagcaattatcactg 7564728  T
Q  462 aattctgtgaatggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaagga 561  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  7564729 aattctttgaatggaacactgaacaatttagtccaagaatccttgtttccataatccttcataacccaaatattcaaaaaagttgtagtgtgagcaagga 7564828  T
Q  562 cgcataagcaatccctacaaacccctaagctaaagtaacgcagacgtt 609  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||    
T  7564829 cccataagcaatccctacaaacccctaagctaaagtaacgcagacgtt 7564876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 483 - 610
Target Start/End: Original strand, 1470922 - 1471049
Alignment:
Q  483 aacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaaa 582  Q
    |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| | | || |||||||||| ||||||| |||||||| |||    
T  1470922 aacaatttagaccaagaatctttatttccataatctttcataacccaaatatccaaaaaagatttggtatgagcaaggatgcataagtaatccctagaaa 1471021  T
Q  583 cccctaagctaaagtaacgcagacgttc 610  Q
    |||| |||||||||| ||||||| ||||    
T  1471022 cccccaagctaaagttacgcagaggttc 1471049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 483 - 610
Target Start/End: Original strand, 1459540 - 1459667
Alignment:
Q  483 aacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaaa 582  Q
    ||||||||||||||||| || ||||||||| |||| ||||||||||||||||||||||||| | | || |||||||||||||||||| |||||||| |||    
T  1459540 aacaatttagtccaagattctttatttccaaaatctttcataacccaaatatccaaaaaagattttgtatgagcaaggacgcataagtaatccctataaa 1459639  T
Q  583 cccctaagctaaagtaacgcagacgttc 610  Q
    |||| |||||||||| | ||||| ||||    
T  1459640 cccccaagctaaagttatgcagaggttc 1459667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 471 - 597
Target Start/End: Complemental strand, 176398 - 176272
Alignment:
Q  471 aatggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagc 570  Q
    ||||||| | |||||||||||||||||||||| |||||||||||||| ||||||  |||||||||||||||||||   || |||||||||||||||| ||    
T  176398 aatggaagagtgaacaatttagtccaagaatctttatttccataatcattcatacgccaaatatccaaaaaagtttcggtgtgagcaaggacgcataggc 176299  T
Q  571 aatccctacaaacccctaagctaaagt 597  Q
    |||||||| ||||||| ||||| ||||    
T  176298 aatccctagaaacccccaagctgaagt 176272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 481 - 584
Target Start/End: Original strand, 370782 - 370885
Alignment:
Q  481 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctaca 580  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||   ||| ||||||| |||| |||||||||| |||||||||||||||| |    
T  370782 tgaacaatttagtccaagaatctttatttccataattcttcataacccaaacgcccataaaagttttagtctgagcaaggatgcataagcaatccctaga 370881  T
Q  581 aacc 584  Q
    ||||    
T  370882 aacc 370885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 472 - 574
Target Start/End: Original strand, 1442096 - 1442198
Alignment:
Q  472 atggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagca 571  Q
    |||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||  ||||||||| ||||    |||||||||||| |||||||||    
T  1442096 atggaacagtgaacaatttagtccaagaatctttaattccataatccttcataacccatgtatccaaaatagttccgttttgagcaaggatgcataagca 1442195  T
Q  572 atc 574  Q
    |||    
T  1442196 atc 1442198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 237 - 306
Target Start/End: Complemental strand, 176668 - 176599
Alignment:
Q  237 ggagaatctctgagacccaacatagcaaagcgtgtaggtcaaggtgatatgagactctcaacatagacat 306  Q
    ||||||||| ||||| ||| || ||||||||  |||||||||||||||||||||||||||||||||||||    
T  176668 ggagaatctttgagagccagcagagcaaagcaagtaggtcaaggtgatatgagactctcaacatagacat 176599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 482 - 578
Target Start/End: Original strand, 1453838 - 1453934
Alignment:
Q  482 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatcccta 578  Q
    |||||||||| ||||||| || ||||||||||||| |||||||||||| ||||||||| |     |||  |||||||||| ||||||||||||||||    
T  1453838 gaacaatttattccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtgagcaaggatgcataagcaatcccta 1453934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 482 - 578
Target Start/End: Original strand, 1465530 - 1465626
Alignment:
Q  482 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatcccta 578  Q
    |||||||||| ||||||| || ||||||||||||| |||||||||||| ||||||||| |     |||  |||||||||| ||||||||||||||||    
T  1465530 gaacaatttattccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtgagcaaggatgcataagcaatcccta 1465626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 271 - 310
Target Start/End: Original strand, 370569 - 370608
Alignment:
Q  271 taggtcaaggtgatatgagactctcaacatagacattaga 310  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  370569 taggtcaaggtgatatgagactctcaacgtagacattaga 370608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 536
Target Start/End: Original strand, 9819831 - 9819881
Alignment:
Q  486 aatttagtccaagaatccttatttccataatccttcataacccaaatatcc 536  Q
    |||||||||||||| ||  |||||||||| |||||||||| ||||||||||    
T  9819831 aatttagtccaagagtctctatttccatattccttcataagccaaatatcc 9819881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 1459314 - 1459355
Alignment:
Q  269 tgtaggtcaaggtgatatgagactctcaacatagacattaga 310  Q
    |||||||||||||||||||||||||||  | |||||||||||    
T  1459314 tgtaggtcaaggtgatatgagactctctgcgtagacattaga 1459355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 535
Target Start/End: Original strand, 9703888 - 9703937
Alignment:
Q  486 aatttagtccaagaatccttatttccataatccttcataacccaaatatc 535  Q
    |||||||||||| ||||  |||||||||| |||||||||| |||||||||    
T  9703888 aatttagtccaaaaatctctatttccatattccttcataagccaaatatc 9703937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 531
Target Start/End: Original strand, 24417481 - 24417533
Alignment:
Q  479 actgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 531  Q
    |||| |||||||||||||||| || ||||||||||| || ||||||| |||||    
T  24417481 actgtacaatttagtccaagattctttatttccatattctttcataatccaaa 24417533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 482 - 590
Target Start/End: Complemental strand, 3927112 - 3927004
Alignment:
Q  482 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaa 581  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||| ||||||  ||| | | ||||||| || ||||||||| || ||    
T  3927112 gaacaatttagtccaagaatttttatttccataatccttcataacccaaatacccaacaaagtttcagtgtaaacaaggacacacaagcaatccttagaa 3927013  T
Q  582 acccctaag 590  Q
    |||||||||    
T  3927012 acccctaag 3927004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 476 - 536
Target Start/End: Original strand, 1078152 - 1078212
Alignment:
Q  476 aacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 536  Q
    |||| |||||||||||||||| || ||  |||||||||| |||||||||||||||| ||||    
T  1078152 aacattgaacaatttagtccacgactctctatttccatactccttcataacccaaacatcc 1078212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 483 - 575
Target Start/End: Complemental strand, 55419834 - 55419742
Alignment:
Q  483 aacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatcc 575  Q
    |||||||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||||   | || ||||||| ||||||||||||||||    
T  55419834 aacaatttagtccaagaatctttatttccataaaccttcataagccagatatccaaaaaagaattggtgtgagcaacgacgcataagcaatcc 55419742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 481 - 531
Target Start/End: Original strand, 22672124 - 22672174
Alignment:
Q  481 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 531  Q
    ||||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  22672124 tgaacaatttagtccaagattccttatttccatattccttcattacccaaa 22672174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 474 - 541
Target Start/End: Complemental strand, 89204 - 89137
Alignment:
Q  474 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 541  Q
    |||||| || |||||||||||||||| || ||||||||||| |||||||||||||||||||| |||||    
T  89204 ggaacattgtacaatttagtccaagactctttatttccatattccttcataacccaaatatcaaaaaa 89137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 476 - 525
Target Start/End: Complemental strand, 6538893 - 6538844
Alignment:
Q  476 aacactgaacaatttagtccaagaatccttatttccataatccttcataa 525  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  6538893 aacactgaacaatttagtccaagaatctttatttccatactccttcataa 6538844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 482 - 531
Target Start/End: Original strand, 7160752 - 7160801
Alignment:
Q  482 gaacaatttagtccaagaatccttatttccataatccttcataacccaaa 531  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  7160752 gaacaatttagtccaagaatcattatttccatactccttcataagccaaa 7160801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 482 - 531
Target Start/End: Original strand, 7168688 - 7168737
Alignment:
Q  482 gaacaatttagtccaagaatccttatttccataatccttcataacccaaa 531  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  7168688 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaa 7168737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 474 - 531
Target Start/End: Original strand, 7156182 - 7156239
Alignment:
Q  474 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 531  Q
    ||||||| ||||||||||| ||||||||| | ||||||||| |||||||||| |||||    
T  7156182 ggaacacggaacaatttagcccaagaatcttcatttccatactccttcataagccaaa 7156239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 474 - 525
Target Start/End: Original strand, 7174363 - 7174414
Alignment:
Q  474 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataa 525  Q
    ||||||| ||||||| ||||||||||||| | ||||||||| ||||||||||    
T  7174363 ggaacacggaacaatctagtccaagaatcttgatttccatattccttcataa 7174414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 474 - 541
Target Start/End: Complemental strand, 33026718 - 33026651
Alignment:
Q  474 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 541  Q
    ||||||| | ||||| |||||||||| |  ||||||||||| | |||||||||||||| |||||||||    
T  33026718 ggaacacggtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaa 33026651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 544
Target Start/End: Complemental strand, 11237754 - 11237684
Alignment:
Q  474 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagt 544  Q
    ||||||| |||||||||||||||||  ||  |||||||||| |||| ||||| ||||| ||| ||||||||    
T  11237754 ggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaacatcgaaaaaagt 11237684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 483 - 531
Target Start/End: Complemental strand, 36577418 - 36577370
Alignment:
Q  483 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 531  Q
    ||||||||| ||||||| || ||||||||||| |||||||||| |||||    
T  36577418 aacaatttaatccaagactctttatttccatattccttcataatccaaa 36577370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 481 - 536
Target Start/End: Complemental strand, 2442093 - 2442038
Alignment:
Q  481 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 536  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| ||||| ||||    
T  2442093 tgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 2442038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 484 - 541
Target Start/End: Complemental strand, 2456300 - 2456243
Alignment:
Q  484 acaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 541  Q
    |||||||||||||||| || ||||||||||| |||||||||||||||| |||| ||||    
T  2456300 acaatttagtccaagagtctttatttccatattccttcataacccaaacatcccaaaa 2456243  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 476 - 541
Target Start/End: Original strand, 9608336 - 9608401
Alignment:
Q  476 aacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 541  Q
    ||||||| | |||||||||||||||||  |||||||||| |||||||||||||||| ||| |||||    
T  9608336 aacactgtataatttagtccaagaatctatatttccatattccttcataacccaaacatcaaaaaa 9608401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 483 - 531
Target Start/End: Complemental strand, 3754652 - 3754604
Alignment:
Q  483 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 531  Q
    ||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  3754652 aacaatttagtccaagactctttatttccatattccttcataacccaaa 3754604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 474 - 541
Target Start/End: Complemental strand, 2631418 - 2631351
Alignment:
Q  474 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 541  Q
    ||||||||| |||||||||||||||| || | ||||||||| |||||||||| ||||| || ||||||    
T  2631418 ggaacactgcacaatttagtccaagactcttgatttccatattccttcataatccaaacattcaaaaa 2631351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 531
Target Start/End: Original strand, 4142131 - 4142181
Alignment:
Q  481 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 531  Q
    ||||||||||||||||||| || ||||||||||| |||||||||| |||||    
T  4142131 tgaacaatttagtccaagactctttatttccatattccttcataagccaaa 4142181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 531
Target Start/End: Original strand, 4157941 - 4157991
Alignment:
Q  481 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 531  Q
    ||||||||||||||||||| || ||||||||||| |||||||||| |||||    
T  4157941 tgaacaatttagtccaagactctttatttccatattccttcataagccaaa 4157991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 484 - 541
Target Start/End: Original strand, 771499 - 771556
Alignment:
Q  484 acaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 541  Q
    |||||||||||||||| ||  |||||||||| |||||||||||||||| |||| ||||    
T  771499 acaatttagtccaagagtctgtatttccatattccttcataacccaaacatcccaaaa 771556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 474 - 539
Target Start/End: Original strand, 7324421 - 7324486
Alignment:
Q  474 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaa 539  Q
    ||||||||  |||||||||||||||| || |||||||| || |||||||||| ||||| |||||||    
T  7324421 ggaacactatacaatttagtccaagactctttatttccgtagtccttcataatccaaacatccaaa 7324486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 539
Target Start/End: Original strand, 2644362 - 2644417
Alignment:
Q  484 acaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaa 539  Q
    |||||||||||||||| || | ||||||||| |||||||||| ||||| |||||||    
T  2644362 acaatttagtccaagactcttgatttccatactccttcataatccaaacatccaaa 2644417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 474 - 541
Target Start/End: Original strand, 9561975 - 9562042
Alignment:
Q  474 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 541  Q
    ||||||||| | |||||||||||||| || | ||||||||| || ||||||| ||||| |||||||||    
T  9561975 ggaacactgtataatttagtccaagactcttgatttccatactcattcataatccaaacatccaaaaa 9562042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 537
Target Start/End: Complemental strand, 13498273 - 13498222
Alignment:
Q  486 aatttagtccaagaatccttatttccataatccttcataacccaaatatcca 537  Q
    |||||||||||||| || ||||||||||| |||||||||| ||||| |||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatcca 13498222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 531
Target Start/End: Original strand, 803215 - 803265
Alignment:
Q  481 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 531  Q
    ||||||| ||||||||||| || ||||||||||| || |||||||||||||    
T  803215 tgaacaacttagtccaagactctttatttccatattctttcataacccaaa 803265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 531
Target Start/End: Complemental strand, 1007515 - 1007465
Alignment:
Q  481 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 531  Q
    |||||||||||||||| || || ||||||||||| |||||||| |||||||    
T  1007515 tgaacaatttagtccaggactcgttatttccatattccttcattacccaaa 1007465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 531
Target Start/End: Complemental strand, 1022543 - 1022493
Alignment:
Q  481 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 531  Q
    |||||||||||||||| || || ||||||||||| |||||||| |||||||    
T  1022543 tgaacaatttagtccatgactcgttatttccatattccttcattacccaaa 1022493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 531
Target Start/End: Original strand, 2696729 - 2696779
Alignment:
Q  481 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 531  Q
    ||||||||||| ||||||| || ||||||||||| |||||||||| |||||    
T  2696729 tgaacaatttaatccaagactctttatttccatattccttcataatccaaa 2696779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 483 - 531
Target Start/End: Complemental strand, 2459327 - 2459279
Alignment:
Q  483 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 531  Q
    |||||||| |||||||| || ||||||||||| |||||||||| |||||    
T  2459327 aacaattttgtccaagactctttatttccatattccttcataatccaaa 2459279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 488 - 536
Target Start/End: Complemental strand, 2502195 - 2502147
Alignment:
Q  488 tttagtccaagaatccttatttccataatccttcataacccaaatatcc 536  Q
    |||||||||| | |||||||||||||| |||||||||| ||||| ||||    
T  2502195 tttagtccaaaactccttatttccatactccttcataatccaaacatcc 2502147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 2659152 - 2659204
Alignment:
Q  484 acaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 536  Q
    |||||||||||||||| || | ||||||||| |||||||||| ||||| ||||    
T  2659152 acaatttagtccaagactcttgatttccatactccttcataatccaaacatcc 2659204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 476 - 536
Target Start/End: Complemental strand, 12133156 - 12133096
Alignment:
Q  476 aacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 536  Q
    |||| |||||||||||||||| || ||  |||||||||| ||| |||||||||||| ||||    
T  12133156 aacattgaacaatttagtccacgactctctatttccatactccctcataacccaaacatcc 12133096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 483 - 531
Target Start/End: Complemental strand, 11081865 - 11081817
Alignment:
Q  483 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 531  Q
    ||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  11081865 aacaatttagtccaagactctttatttccatactccttcataacccaaa 11081817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 531
Target Start/End: Original strand, 23766859 - 23766909
Alignment:
Q  481 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 531  Q
    ||||||||||||||||||| || ||||||||||| || ||||||| |||||    
T  23766859 tgaacaatttagtccaagactctttatttccatattctttcataatccaaa 23766909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 531
Target Start/End: Original strand, 23816707 - 23816757
Alignment:
Q  481 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 531  Q
    ||||||||||||||||||| || ||||||||||| || ||||||| |||||    
T  23816707 tgaacaatttagtccaagactctttatttccatattctttcataatccaaa 23816757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 539
Target Start/End: Complemental strand, 20293044 - 20292991
Alignment:
Q  486 aatttagtccaagaatccttatttccataatccttcataacccaaatatccaaa 539  Q
    |||||||||||||| || ||| ||||||| |||||||||| ||||| |||||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaacatccaaa 20292991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 474 - 535
Target Start/End: Original strand, 51381445 - 51381506
Alignment:
Q  474 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatc 535  Q
    |||| ||||||||||||||||||||| || | ||||||||| || ||||||| |||||||||    
T  51381445 ggaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatc 51381506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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