View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1509-Insertion-5 (Length: 584)
Name: NF1509-Insertion-5
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509-Insertion-5 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 7 - 584
Target Start/End: Complemental strand, 15921413 - 15920835
Alignment:
| Q |
7 |
aatgttactccagttccactcatccgtcttatttgctaccactcgaattcctgctgtctttagatcccgtatgctcttataagtattccaattcgaatta |
106 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15921413 |
aatgttactccagttccactcatctgtcttatttgctaccactcgaattcctactgtttttagatcccgtatgctcttataagtattccaattaaaatta |
15921314 |
T |
|
| Q |
107 |
atttcttccttatccctgtcttcttggtcttgatttgtattttt-ccgcatcgaattatgttcacctccttcaaactgtgtttccatttggccatgttct |
205 |
Q |
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|| ||||||| ||| |||||||||||||||||| |||||||||| |||||| ||| |||||||||||||||| |||||||||||||||||||||||| || |
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| T |
15921313 |
atatcttcctcatcactgtcttcttggtcttgagttgtattttttccgcattgaactatgttcacctccttccaactgtgtttccatttggccatgtcct |
15921214 |
T |
|
| Q |
206 |
tcgatgttggaaaacttattgcgtgacaagtactctgagcgagcaaaatcgagtagatgaaagggcttaggattttccaattgaaccacttccattcctt |
305 |
Q |
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|||| |||||||| ||| ||| ||||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| | ||||||| |
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| T |
15921213 |
tcgacgttggaaacctttttgggtgacaagtacaatgaacgagcaaaatcgagtagatgacagggcttagtattttccaattgaaccattaccattccgc |
15921114 |
T |
|
| Q |
306 |
ctcgtttatattcacccaaactatcataattgttaattaaaaatcccaaatcaaaacccgcttcttcgcatagaatctcaagcattattcttggaagttg |
405 |
Q |
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||||||| | ||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| | ||||||| || |
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| T |
15921113 |
atcgtttacctcgacccaaattatcataattgttaattaaaaatcccaaatcataacccgcttctttgcatagaatctcaagcattttgtttggaagctg |
15921014 |
T |
|
| Q |
406 |
attctccaacaataaagtatctctccatatgtgcatcagttgatcaaacttaaggtttagggcatccgggcattggtcatcaacattttccataaagtgt |
505 |
Q |
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||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15921013 |
gttctctaacaaattagtatctctccatatgtgcatcagttggtcaaacttaaggtttagggcatccgggcattggtcatcaacattttccataaagtgt |
15920914 |
T |
|
| Q |
506 |
agcaaagaacatccatccacaaacaatatccaagcaagatcattattattgtagccttcaattgcatcctcagtgaaca |
584 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15920913 |
agcaaagaacatccatccacaaacaatatccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaaca |
15920835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 7 - 584
Target Start/End: Original strand, 15873684 - 15874262
Alignment:
| Q |
7 |
aatgttactccagttccactcatccgtcttatttgctaccactcgaattcctgctgtctttagatcccgtatgctcttataagtattccaattcgaatta |
106 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15873684 |
aatgttactccagttccactcatctgtcttatttgctaccacttgaattcctactgtctttagatcccgtatgctcttataagtattccaattcaaatta |
15873783 |
T |
|
| Q |
107 |
atttcttccttatccctgtcttcttggtcttgatttgtatttttccgcatcgaattatgttcacctccttcaaactgtgtttccatttggccatgttctt |
206 |
Q |
| |
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|||||||||| ||| | ||||||||||||||| || ||||||||| ||||||||| ||||||| ||||||| | ||||||||||||| |||||||||| |
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| T |
15873784 |
atttcttcctcatcaatatcttcttggtcttgagttttatttttcctcatcgaattgtgttcacttccttcagattgtgtttccattttaccatgttctt |
15873883 |
T |
|
| Q |
207 |
cgatgttggaaaacttattgcgtgacaagtactctgagcgagcaaaatcgagtagatgaaagggcttaggattttccaattgaaccacttccattccttc |
306 |
Q |
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| |||||||||| | ||||| ||| ||||||| |||| ||||||||||| |||| |||||||||||||||||||||||||| || | | ||||||| |
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| T |
15873884 |
caatgttggaaaccatattgggtggcaagtacactgaacgagcaaaatcaagtatatgaaagggcttaggattttccaatttgactattaccattccaag |
15873983 |
T |
|
| Q |
307 |
tcgtttatattcacccaaactatcataattgttaattaaaaatcccaaatcaaaacccgcttcttcgcatagaatctcaagcattattcttgg-aagttg |
405 |
Q |
| |
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|||||| ||||||||| | | | ||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
15873984 |
tcgtttggattcacccatatcaaaagaattgttaattaaaaattccaaatcaatacccatttcttcgcatagaatctcaagcattattcttgggaagttg |
15874083 |
T |
|
| Q |
406 |
attctccaacaataaagtatctctccatatgtgcatcagttgatcaaacttaaggtttagggcatccgggcattggtcatcaacattttccataaagtgt |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
15874084 |
attctccaacaataaagtatctctccatatgtgcatcagttggtcaaacttaaggtttagggcattcgggcattggtcatcaacatttcccataaagtgt |
15874183 |
T |
|
| Q |
506 |
agcaaagaacatccatccacaaacaatatccaagcaagatcattattattgtagccttcaattgcatcctcagtgaaca |
584 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15874184 |
agcaaagaacatccatccacaaacaatatccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaaca |
15874262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 7 - 584
Target Start/End: Complemental strand, 15900363 - 15899807
Alignment:
| Q |
7 |
aatgttactccagttccactcatccgtcttatttgctaccactcgaattcctgctgtctttagatcccgtatgctcttataagtattccaattcgaatta |
106 |
Q |
| |
|
||||||||||||| |||||| ||| |||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||| ||| | |
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|
| T |
15900363 |
aatgttactccaggtccacttatctgtcttatttgctaccacttgaattcctactgtttttagatcccgtatgctcttataagtattccaattgaaatca |
15900264 |
T |
|
| Q |
107 |
atttcttccttatccctgtcttcttggtcttgatttgtatttttccgcatcgaattatgttcacctccttcaaactgtgtttccatttggccatgttctt |
206 |
Q |
| |
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|||||| |||||| || |||| ||||||||| ||||||||||| | ||| ||||||| | ||||| | ||| ||||||||||| ||||||||| |
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| T |
15900263 |
atttctggcttatcactatctttttggtcttgctttgtattttttgg------attgtgttcactttcttcatattgtttttccatttgggcatgttctt |
15900170 |
T |
|
| Q |
207 |
cgatgttggaaaacttattgcgtgacaagtactctgagcgagcaaaatcgagtagatgaaagggcttaggattttccaattgaaccacttccattccttc |
306 |
Q |
| |
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| | ||||| || |||| |||| ||| ||||||| |||| ||||||||||||| ||||||||||||| | || | ||||||| |
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| T |
15900169 |
caaagttgggaac---------------gtacactgaacgaccaaaatcaagtaaatgaaagggcttatgattttccaattggagcattgccattccaag |
15900085 |
T |
|
| Q |
307 |
tcgtttatattcacccaaactatcataattgttaattaaaaatcccaaatcaaaacccgcttcttcgcatagaatctcaagcattattcttggaagttga |
406 |
Q |
| |
|
|||||| || |||||| | | |||||||||||||||| ||||||||| || || |||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
15900084 |
tcgtttgcatgcacccattgcaaaagaattgttaattaaaaaatccaaatcaacactcgtttcttcgcatagaatctcaagcattatttttggaagttga |
15899985 |
T |
|
| Q |
407 |
ttctccaacaataaagtatctctccatatgtgcatcagttgatcaaacttaaggtttagggcatccgggcattggtcatcaacattttccataaagtgta |
506 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15899984 |
ttctccaacaaaaaagtatctctccatatgtgcatcagttggtcaaacttaaggtttagggcatccgggcattggtcatcaacattttccataaagtgta |
15899885 |
T |
|
| Q |
507 |
gcaaagaacatccatccacaaacaatatccaagcaagatcattattattgtagccttcaattgcatcctcagtgaaca |
584 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
15899884 |
gcaaagaacatccatccacaaacaatatccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaaca |
15899807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 397 - 584
Target Start/End: Original strand, 14049119 - 14049306
Alignment:
| Q |
397 |
tggaagttgattctccaacaataaagtatctctccatatgtgcatcagttgatcaaacttaaggtttagggcatccgggcattggtcatcaacattttcc |
496 |
Q |
| |
|
||||||||| ||||||||||| | |||||||||||||| ||||| ||||||||||||||| ||||| | || || |||||||||| ||||||||| |
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| T |
14049119 |
tggaagttggttctccaacaacttaacatctctccatatgtacatcaattgatcaaacttaagatttagcccttcaggatattggtcatcgacattttcc |
14049218 |
T |
|
| Q |
497 |
ataaagtgtagcaaagaacatccatccacaaacaatatccaagcaagatcattattattgtagccttcaattgcatcctcagtgaaca |
584 |
Q |
| |
|
||||| || ||||| |||||||||||||| |||||||||||||||||||| || | |||| | |||||||||||||| || ||||||| |
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|
| T |
14049219 |
ataaaatgcagcaaggaacatccatccacgaacaatatccaagcaagatcgttgtcattgaatccttcaattgcatcttccgtgaaca |
14049306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 397 - 584
Target Start/End: Original strand, 14060490 - 14060677
Alignment:
| Q |
397 |
tggaagttgattctccaacaataaagtatctctccatatgtgcatcagttgatcaaacttaaggtttagggcatccgggcattggtcatcaacattttcc |
496 |
Q |
| |
|
||||||||| ||||| ||||| || |||||||||||| | ||||| ||| ||||||||||| ||||| | || || |||||||||| |||||| || |
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| T |
14060490 |
tggaagttggttctctaacaacgaaacatctctccatatatacatcaattggtcaaacttaagatttagcccttcgggatattggtcatcgacatttccc |
14060589 |
T |
|
| Q |
497 |
ataaagtgtagcaaagaacatccatccacaaacaatatccaagcaagatcattattattgtagccttcaattgcatcctcagtgaaca |
584 |
Q |
| |
|
|| || |||||||| |||||||||||||| ||||||||||||||||||||||| | |||| | |||||||||||||| |||||||||| |
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| T |
14060590 |
atgaaatgtagcaaggaacatccatccacgaacaatatccaagcaagatcattgtcattgaatccttcaattgcatcttcagtgaaca |
14060677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 14060100 - 14060189
Alignment:
| Q |
10 |
gttactccagttccactcatccgtcttatttgctaccactcgaattcctgctgtctttagatcccgtatgctcttataagtattccaatt |
99 |
Q |
| |
|
||||||||| |||| |||| |||||||||| | ||||||||||||| | | |||||||||| |||||| ||||||||||||||||| |
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|
| T |
14060100 |
gttactccatgtccatgcatctgtcttatttggtttcactcgaattcctattatttttagatcccttatgcttttataagtattccaatt |
14060189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 14048729 - 14048815
Alignment:
| Q |
10 |
gttactccagttccactcatccgtcttatttgctaccactcgaattcctgctgtctttagatcccgtatgctcttataagtattcca |
96 |
Q |
| |
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||||||||| |||| |||| |||||||||| | ||||||||||||| | | |||||||||| |||||| |||||||||||||| |
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| T |
14048729 |
gttactccatgtccatgcatctgtcttatttggtttcactcgaattcctaccatttttagatcccttatgcttttataagtattcca |
14048815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 503 - 537
Target Start/End: Complemental strand, 21785738 - 21785704
Alignment:
| Q |
503 |
tgtagcaaagaacatccatccacaaacaatatcca |
537 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| |
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|
| T |
21785738 |
tgtagcaaagaacatccatccacaaacaacatcca |
21785704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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