View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1509-Insertion-6 (Length: 480)
Name: NF1509-Insertion-6
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509-Insertion-6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 8 - 480
Target Start/End: Original strand, 43134972 - 43135444
Alignment:
| Q |
8 |
aactcctcgtccataatcagagacaagctccaagtctttgaaatacctcaagtaagcgacatccacataggtgacactcttgtcagcgaacaacatgata |
107 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43134972 |
aactcctcgtgcataatcagagacaagctccaagtcttcgaaatacctcaagtaagcgacatccacataggtgacactcttgttagcgaacaacatgata |
43135071 |
T |
|
| Q |
108 |
tccaccaagtagagcagatatatgtggagagatttttctcgcttctactgcatctcagctatatgatcagccttgcaggactcctttgcctcccgaagac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43135072 |
tccaccaagtagagcagatatatgtggagagatttttctcgcttctcctgcatctcagctatatgatcagccttgcaggcctcctttgcctcccgaagac |
43135171 |
T |
|
| Q |
208 |
gctccttgcaaatatccttcaacgagctaaatagtgcttgaacaccatttgccctttccatatgctcccatgccttgaccacaacaactccaacagctgc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43135172 |
gctccttgcaaatatccttcaacgagctaaatagtgcttgaacaccatttgtcctttccatatgctcccatgccttgaccacaacaactccaacagctgc |
43135271 |
T |
|
| Q |
308 |
accatcatgtcaacaacctgggcccttaactagaatctcaatttagaattcctcattacaattttacttaaaaatttcaactcattgtttgtgattttgt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43135272 |
accatcatgtcaacaacctgggcccttaactagaatctcaatttaggattcctcactacaattttacttaaaaatttcaactcattgtttgtgattttgt |
43135371 |
T |
|
| Q |
408 |
ctgcgcattctcggtcactactagcacttctctgcttgcaatttcatcatgtactcatccttccacgtttgta |
480 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43135372 |
ctgcgcattctcggtcactactagcacttctctgcttgcaatttcatcatgtactcatccttccacgtttgta |
43135444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 244
Target Start/End: Original strand, 17999251 - 17999448
Alignment:
| Q |
46 |
tgaaatacctcaagtaagcgacatccacataggtgacactcttgtcagcgaacaacatgatatccaccaagtagagcagatatatgtggagagatttttc |
145 |
Q |
| |
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|||| |||||||| |||| |||||||||||||||| |||||||||||| ||| | ||||||| ||| |||||| |||| ||||||| ||| ||| | || |
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| T |
17999251 |
tgaagtacctcaaataagtgacatccacataggtggcactcttgtcagtgaagagcatgatacccatcaagtatagcaaatatatgcggaaagactgttt |
17999350 |
T |
|
| Q |
146 |
tcgcttctactgcatctcagctatatgatcagccttgcaggactcctttgcctcccgaagacgctccttgcaaatatccttcaacgagctaaatagtgc |
244 |
Q |
| |
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||||||| |||||||||||| | |||| || | | ||| || || ||||| | |||||||||||||| ||||||| |||||| |||||||| |||| |
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| T |
17999351 |
ccgcttctcctgcatctcagccaaatgacca-acatataggcctgctatgccttctgaagacgctccttgaaaatatcattcaaccagctaaatcgtgc |
17999448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 22 - 326
Target Start/End: Original strand, 1347516 - 1347821
Alignment:
| Q |
22 |
aatcagagacaagctccaagtctttgaaatacctcaagtaagcgacatccacataggtgacactcttgtcagcgaacaacatgatatccaccaagtagag |
121 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| || ||||||||||||||||||||| |||||||||||| ||| | | ||||| ||||||||||||| |
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| T |
1347516 |
aatcagagacaagctccaagtctctgaagtacctaaactaagcgacatccacataggtggcactcttgtcagtgaagagcgtgatacccaccaagtagag |
1347615 |
T |
|
| Q |
122 |
cagatatatgtggagagatttttctcgcttctactgcatctcagctatatgatcagccttgcaggactcctttgcctcccgaagacgctccttgcaaata |
221 |
Q |
| |
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| || |||| | ||||| | || ||||||| ||||||||| |||||| | || ||||| | || | |||| | ||||| |||||||| ||||| |
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| T |
1347616 |
aaaatttatgcgaagagactggtcccgcttctcttgcatctcaactatataaccatccttgtgagccttatgagccttctgaagatgctccttgaaaata |
1347715 |
T |
|
| Q |
222 |
tccttcaacgagctaaatagtgcttgaacaccatttgccctttccatatgctcccatgccttgaccacaaca-actccaacagctgcaccatcatgtcaa |
320 |
Q |
| |
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||||||||| | |||||| || | || ||||| || |||||||| | ||| ||||||||||||| | || | ||||| |||||||||||||| || |
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| T |
1347716 |
tccttcaacaaactaaatcgttcatgggcaccaattttcctttccacctactctcatgccttgaccatatcatcccccaactactgcaccatcatgttaa |
1347815 |
T |
|
| Q |
321 |
caacct |
326 |
Q |
| |
|
|||||| |
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|
| T |
1347816 |
caacct |
1347821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 46 - 267
Target Start/End: Complemental strand, 28769335 - 28769115
Alignment:
| Q |
46 |
tgaaatacctcaagtaagcgacatccacataggtgacactcttgtcagcgaacaacatgatatccaccaagtagagcagatatatgtggagagatttttc |
145 |
Q |
| |
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|||| |||||||| |||| |||||||||||||||| | |||||||||| ||| | ||||||| ||| |||||| |||| ||||||| ||| ||||| || |
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| T |
28769335 |
tgaagtacctcaaataagtgacatccacataggtggcgctcttgtcagtgaagagcatgatacccatcaagtatagcaaatatatgcggaaagattgttt |
28769236 |
T |
|
| Q |
146 |
tcgcttctactgcatctcagctatatgatcagccttgcaggactcctttgcctcccgaagacgctccttgcaaatatccttcaacgagctaaatagtgct |
245 |
Q |
| |
|
||||||| |||||||||||| | |||| || | || ||| || | ||||| | |||||||||||||| ||||||| |||||| |||||||| |||| |
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| T |
28769235 |
ccgcttctcctgcatctcagccaaatgacca-acatgtaggcctattgtgccttctgaagacgctccttgaaaatatcattcaaccagctaaatcgtgca |
28769137 |
T |
|
| Q |
246 |
tgaacaccatttgccctttcca |
267 |
Q |
| |
|
| ||||||||| |||||||| |
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| T |
28769136 |
taggcaccatttgtcctttcca |
28769115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 320
Target Start/End: Original strand, 26630308 - 26630425
Alignment:
| Q |
204 |
agacgctccttgcaaatatccttcaacgagctaaatagtgcttgaacaccatttgccctttccatatgctcccatgccttgaccacaaca-actccaaca |
302 |
Q |
| |
|
|||||||||||| |||| |||||||| || ||||| |||| || ||| ||||| |||||||| |||||||||||||| ||||| || || |||||| |
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|
| T |
26630308 |
agacgctccttgaaaatttccttcaagtagataaatcgtgcatgtccacaatttgtcctttccacctgctcccatgccttcaccacttcagaccccaaca |
26630407 |
T |
|
| Q |
303 |
gctgcaccatcatgtcaa |
320 |
Q |
| |
|
||||||||||||||||| |
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| T |
26630408 |
actgcaccatcatgtcaa |
26630425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 7033473 - 7033353
Alignment:
| Q |
19 |
cataatcagagacaagctccaagtctttgaaatacctcaagtaagcgacatccacataggtgacactcttgtcagcgaacaacatgatatccaccaagta |
118 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| ||| | ||||| | |||||||| ||||||| ||||||||| || ||| | ||||| | |||||||| |
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|
| T |
7033473 |
cataatcagagacaagatccaagtctctgaagtactttaagtacgtgacatccatataggtggcactcttgttagtgaatagtgtgatacctaccaagta |
7033374 |
T |
|
| Q |
119 |
gagcagatatatgtggagaga |
139 |
Q |
| |
|
||||| ||||||| ||||||| |
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| T |
7033373 |
gagcaaatatatgcggagaga |
7033353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 33319045 - 33319103
Alignment:
| Q |
19 |
cataatcagagacaagctccaagtctttgaaatacctcaagtaagcgacatccacatag |
77 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||| ||||| |||||||||||| |
|
|
| T |
33319045 |
cataatcagagacaagctccaagtttttgaagtacctcaaataagcaacatccacatag |
33319103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 404
Target Start/End: Original strand, 35345400 - 35345469
Alignment:
| Q |
335 |
aactagaatctcaatttagaattcctcattacaattttacttaaaaatttcaactcattgtttgtgattt |
404 |
Q |
| |
|
||||||||||||||||||| ||| ||||| ||||||| |||| |||||||||||||||| |||||||| |
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|
| T |
35345400 |
aactagaatctcaatttaggatttttcattgcaatttttcttagaaatttcaactcattgcatgtgattt |
35345469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 26852843 - 26852945
Alignment:
| Q |
19 |
cataatcagagacaagctccaagtctttgaaatacctcaagtaagcgacatccacataggtgacactcttgtcagcgaacaacatgatatccaccaagta |
118 |
Q |
| |
|
|||||| ||| |||||||||| |||| |||| ||||||||||| | |||||||||||| | | ||||||| || ||||||||||||| |||||||||| |
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|
| T |
26852843 |
cataattagatacaagctccaggtctctgaagtacctcaagtatgtcacatccacatagtttgcgctcttgttagtgaacaacatgatacccaccaagta |
26852942 |
T |
|
| Q |
119 |
gag |
121 |
Q |
| |
|
||| |
|
|
| T |
26852943 |
gag |
26852945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 407
Target Start/End: Complemental strand, 32809895 - 32809820
Alignment:
| Q |
332 |
cttaactagaatctcaatttagaattcctcattacaattttacttaaaaatttcaactcattgtttgtgattttgt |
407 |
Q |
| |
|
||||||||||||| |||||||| ||| |||||| ||||||||||| |||||| ||||||||| ||||||||||| |
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|
| T |
32809895 |
cttaactagaatcccaatttagtatttctcattgcaattttactttgaaattttgactcattgtctgtgattttgt |
32809820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 403
Target Start/End: Complemental strand, 27877261 - 27877189
Alignment:
| Q |
331 |
ccttaactagaatctcaatttagaattcctcattacaattttacttaaaaatttcaactcattgtttgtgatt |
403 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||| |||||| | || ||||||| ||||||||||||||||| |
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|
| T |
27877261 |
ccttaattagaatctcaatttaagattcctcattgcaatttcatctagaaatttcgactcattgtttgtgatt |
27877189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 27306296 - 27306354
Alignment:
| Q |
19 |
cataatcagagacaagctccaagtctttgaaatacctcaagtaagcgacatccacatag |
77 |
Q |
| |
|
|||||||||||||||||||||||||| |||| || ||||| || || |||||| ||||| |
|
|
| T |
27306296 |
cataatcagagacaagctccaagtctctgaagtaactcaaatacgcaacatcctcatag |
27306354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 15343444 - 15343327
Alignment:
| Q |
19 |
cataatcagagacaagctccaagtctttgaaatacctcaagtaagcgacatccacataggtgacactcttgtcagcgaacaacatgatatccaccaagta |
118 |
Q |
| |
|
||||| ||| |||||||||||||||| |||| ||| |||| ||||| |||||||||||| | | ||||||| || ||| | | ||||| |||||||||| |
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|
| T |
15343444 |
cataaccagcgacaagctccaagtctctgaagtacttcaaataagcaacatccacatagtaggcgctcttgttagtgaagagcgtgatacccaccaagta |
15343345 |
T |
|
| Q |
119 |
gagcagatatatgtggag |
136 |
Q |
| |
|
||||| |||||| ||||| |
|
|
| T |
15343344 |
gagcaaatatatatggag |
15343327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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